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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>15363_15363_1_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000216378_DNM2_chr19_10939711_ENST00000314646_length(amino acids)=276AA_BP=1
MTSGDLPASASQSAGITGVSHHSRLKIHFKKIYSSMMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRM
LKTKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSS
IHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPIPSRPGPQSVFANSDLFPAPPQIPSRPVRIPPGIPPGVPSRRPPAAPSRPTIIRPA

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>15363_15363_2_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000216378_DNM2_chr19_10939711_ENST00000355667_length(amino acids)=276AA_BP=1
MTSGDLPASASQSAGITGVSHHSRLKIHFKKIYSSMMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRM
LKTKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSS
IHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPIPSRPGPQSVFANSDLFPAPPQIPSRPVRIPPGIPPGVPSRRPPAAPSRPTIIRPA

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>15363_15363_3_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000216378_DNM2_chr19_10939711_ENST00000359692_length(amino acids)=276AA_BP=1
MTSGDLPASASQSAGITGVSHHSRLKIHFKKIYSSMMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRM
LKTKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSS
IHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPIPSRPGPQSVFANSDLFPAPPQIPSRPVRIPPGIPPGVPSRRPPAAPSRPTIIRPA

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>15363_15363_4_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000216378_DNM2_chr19_10939711_ENST00000389253_length(amino acids)=276AA_BP=1
MTSGDLPASASQSAGITGVSHHSRLKIHFKKIYSSMMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRM
LKTKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSS
IHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPIPSRPGPQSVFANSDLFPAPPQIPSRPVRIPPGIPPGVPSRRPPAAPSRPTIIRPA

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>15363_15363_5_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000216378_DNM2_chr19_10939711_ENST00000408974_length(amino acids)=276AA_BP=1
MTSGDLPASASQSAGITGVSHHSRLKIHFKKIYSSMMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRM
LKTKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSS
IHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPIPSRPGPQSVFANSDLFPAPPQIPSRPVRIPPGIPPGVPSRRPPAAPSRPTIIRPA

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>15363_15363_6_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000216378_DNM2_chr19_10939711_ENST00000585892_length(amino acids)=275AA_BP=1
MTSGDLPASASQSAGITGVSHHSRLKIHFKKIYSSMMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRM
LKTKAFIHHELLAYLYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSS
IHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPIPSRPGPQSVFANSDLFPAPPQIPSRPVRIPPGIPPGVPRRPPAAPSRPTIIRPAE

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>15363_15363_7_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000395834_DNM2_chr19_10939711_ENST00000314646_length(amino acids)=241AA_BP=57
MMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKTKAFIHHELLAYLYSSADQSSLMEESADQAQRR
DDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPI

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>15363_15363_8_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000395834_DNM2_chr19_10939711_ENST00000355667_length(amino acids)=241AA_BP=57
MMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKTKAFIHHELLAYLYSSADQSSLMEESADQAQRR
DDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPI

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>15363_15363_9_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000395834_DNM2_chr19_10939711_ENST00000359692_length(amino acids)=241AA_BP=57
MMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKTKAFIHHELLAYLYSSADQSSLMEESADQAQRR
DDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPI

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>15363_15363_10_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000395834_DNM2_chr19_10939711_ENST00000389253_length(amino acids)=241AA_BP=57
MMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKTKAFIHHELLAYLYSSADQSSLMEESADQAQRR
DDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPI

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>15363_15363_11_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000395834_DNM2_chr19_10939711_ENST00000408974_length(amino acids)=241AA_BP=57
MMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKTKAFIHHELLAYLYSSADQSSLMEESADQAQRR
DDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPI

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>15363_15363_12_CDKL1-DNM2_CDKL1_chr14_50862418_ENST00000395834_DNM2_chr19_10939711_ENST00000585892_length(amino acids)=241AA_BP=57
MMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKTKAFIHHELLAYLYSSADQSSLMEESADQAQRR
DDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPPI

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