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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>16835_16835_1_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000320936_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=120AA_BP=96
MPDSVAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRG

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>16835_16835_2_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000444172_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=63AA_BP=39

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>16835_16835_3_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000585630_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=118AA_BP=94
MPQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRGRG

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>16835_16835_4_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000586472_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=120AA_BP=96
MPDSVAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRG

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>16835_16835_5_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000586773_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=118AA_BP=94
MPQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRGRG

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>16835_16835_6_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000587323_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=120AA_BP=96
MPDSVAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRG

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>16835_16835_7_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000587896_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=133AA_BP=109
MWCAVFPLASGTCPTQCVAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK

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>16835_16835_8_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000588030_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=191AA_BP=167
MPACFVAWAGPWPPQDLPVWGRRDHQLSPATGVGDSHSATPTCSPSWSLTSVWLAAGRSPGRLGGPRTPQGTLGWQAAMASDEGKLFVGG
LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRGRGFSRGPLPTSAGWSWRTV

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>16835_16835_9_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000588090_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=144AA_BP=120
MRPPVGTQDRGEIPGSHGCSQTQLTPEAQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD

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>16835_16835_10_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000588230_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=120AA_BP=96
MPDSVAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRG

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>16835_16835_11_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000589235_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=120AA_BP=96
MPDSVAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRG

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>16835_16835_12_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000589660_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=113AA_BP=89
MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRGRGFSRGP

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>16835_16835_13_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000589686_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=118AA_BP=94
MPQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRGRG

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>16835_16835_14_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000589710_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=118AA_BP=94
MPQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGRGRG

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>16835_16835_15_CIRBP-PKNOX1_CIRBP_chr19_1271411_ENST00000591935_PKNOX1_chr21_44450156_ENST00000432907_length(amino acids)=121AA_BP=97
MTPEAQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKGGRGFFRGGRGR

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