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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>18945_18945_1_CPE-AMACR_CPE_chr4_166300680_ENST00000402744_AMACR_chr5_34006004_ENST00000335606_length(amino acids)=482AA_BP=182
MQLPWAPRPVVQPVEPRLCPSPLGGPSARADTHSAGEGEASRGWCGTCRPQQRRRAKPRAGQTKEAARVGRHGRRRRSAAMAGRGGSALL
ALCGALAACGWLLGAEAQEPGAPAAGMRRRRRLQQEDGISFEYHRYPELREALVSVWLQCTAISRIYTVGRSFEGRELLVIELSDNPGVH
EPGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFD
RTRTGKGQVIDANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQFYELLIKGLGLKSDELPNQMS
MDDWPEMKKKFADVFAEKTKAEWCQIFDGTDACVTPVLTFEEVVHHDHNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHT

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>18945_18945_2_CPE-AMACR_CPE_chr4_166300680_ENST00000402744_AMACR_chr5_34006004_ENST00000382072_length(amino acids)=298AA_BP=182
MQLPWAPRPVVQPVEPRLCPSPLGGPSARADTHSAGEGEASRGWCGTCRPQQRRRAKPRAGQTKEAARVGRHGRRRRSAAMAGRGGSALL
ALCGALAACGWLLGAEAQEPGAPAAGMRRRRRLQQEDGISFEYHRYPELREALVSVWLQCTAISRIYTVGRSFEGRELLVIELSDNPGVH
EPGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLAGHDINYLALSGGRNSIFKFFSVENSEIESVGSTSRTEHVGWWSTFLYDLQ

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