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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>19168_19168_1_CPSF6-MYF6_CPSF6_chr12_69633486_ENST00000266679_MYF6_chr12_81101634_ENST00000228641_length(amino acids)=220AA_BP=23
MKEDGGRRGPHRHLRGCRRRVQPDQMPPEAGSDSSGEEHVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEA
FEALKRRTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFLRTCSSQWPSVSDHSRGLVITAK

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>19168_19168_2_CPSF6-MYF6_CPSF6_chr12_69633486_ENST00000435070_MYF6_chr12_81101634_ENST00000228641_length(amino acids)=220AA_BP=23
MKEDGGRRGPHRHLRGCRRRVQPDQMPPEAGSDSSGEEHVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEA
FEALKRRTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFLRTCSSQWPSVSDHSRGLVITAK

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>19168_19168_3_CPSF6-MYF6_CPSF6_chr12_69633486_ENST00000456847_MYF6_chr12_81101634_ENST00000228641_length(amino acids)=220AA_BP=23
MKEDGGRRGPHRHLRGCRRRVQPDQMPPEAGSDSSGEEHVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEA
FEALKRRTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFLRTCSSQWPSVSDHSRGLVITAK

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>19168_19168_4_CPSF6-MYF6_CPSF6_chr12_69633486_ENST00000551516_MYF6_chr12_81101634_ENST00000228641_length(amino acids)=195AA_BP=0
MPPEAGSDSSGEEHVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANPNQRLPKVEILRSA
ISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFLRTCSSQWPSVSDHSRGLVITAKEGGASIDSSASSSLRCLSSIVDSIS

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