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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>19821_19821_1_CSNK1D-POLR2E_CSNK1D_chr17_80223561_ENST00000392334_POLR2E_chr19_1090987_ENST00000215587_length(amino acids)=209AA_BP=1
MGSWFSRSLYRASSSVTSSLVMTTCSGTSSCSVMLMSSSCCRNCSRMYLGAMSTRDSSLHHLVDFALNVELRVFGFDTFKLDGNLFSCSN
VRTEIDVSEGAAADLPAQPVPVPDSQLHGGGGPIRSCPPGRFLGLNSGRRRRCCRYCGSGSRLRPPHGPAFTIAFLSPRRSQRLNTGRMG

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>19821_19821_2_CSNK1D-POLR2E_CSNK1D_chr17_80223561_ENST00000392334_POLR2E_chr19_1090987_ENST00000586746_length(amino acids)=188AA_BP=14
MKGDLGPEDPSPSAAGRGQAGPVGAGAAAAALGLSHPPRIEALGAAGRQESDGESGAVRGAEPGAGPAVAAAAAPPPRVQTQEAAGRAGA
NRAAAAMELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVPGRHGPQVHPGAVSAAGAAHQ

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>19821_19821_3_CSNK1D-POLR2E_CSNK1D_chr17_80223562_ENST00000392334_POLR2E_chr19_1089550_ENST00000215587_length(amino acids)=168AA_BP=0
MYLPAVSLGRMIFTTSSLHHLVDFALNVELRVFGFDTFKLDGNLFSCSNVRTEIDVSEGAAADLPAQPVPVPDSQLHGGGGPIRSCPPGR

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>19821_19821_4_CSNK1D-POLR2E_CSNK1D_chr17_80223562_ENST00000392334_POLR2E_chr19_1089550_ENST00000586746_length(amino acids)=166AA_BP=
MKGDLGPEDPSPSAAGRGQAGPVGAGAAAAALGLSHPPRIEALGAAGRQESDGESGAVRGAEPGAGPAVAAAAAPPPRVQTQEAAGRAGA

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>19821_19821_5_CSNK1D-POLR2E_CSNK1D_chr17_80223562_ENST00000392334_POLR2E_chr19_1090144_ENST00000215587_length(amino acids)=182AA_BP=1
MGSWFSRSLYRASSSVTSSLVMTTCSGTSSSLHHLVDFALNVELRVFGFDTFKLDGNLFSCSNVRTEIDVSEGAAADLPAQPVPVPDSQL
HGGGGPIRSCPPGRFLGLNSGRRRRCCRYCGSGSRLRPPHGPAFTIAFLSPRRSQRLNTGRMGQSERRRRCSGPYRSRLPSPRRGWTRIF

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>19821_19821_6_CSNK1D-POLR2E_CSNK1D_chr17_80223562_ENST00000392334_POLR2E_chr19_1090144_ENST00000586746_length(amino acids)=161AA_BP=
MKGDLGPEDPSPSAAGRGQAGPVGAGAAAAALGLSHPPRIEALGAAGRQESDGESGAVRGAEPGAGPAVAAAAAPPPRVQTQEAAGRAGA

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>19821_19821_7_CSNK1D-POLR2E_CSNK1D_chr17_80223562_ENST00000392334_POLR2E_chr19_1090987_ENST00000215587_length(amino acids)=209AA_BP=1
MGSWFSRSLYRASSSVTSSLVMTTCSGTSSCSVMLMSSSCCRNCSRMYLGAMSTRDSSLHHLVDFALNVELRVFGFDTFKLDGNLFSCSN
VRTEIDVSEGAAADLPAQPVPVPDSQLHGGGGPIRSCPPGRFLGLNSGRRRRCCRYCGSGSRLRPPHGPAFTIAFLSPRRSQRLNTGRMG

--------------------------------------------------------------

>19821_19821_8_CSNK1D-POLR2E_CSNK1D_chr17_80223562_ENST00000392334_POLR2E_chr19_1090987_ENST00000586746_length(amino acids)=188AA_BP=14
MKGDLGPEDPSPSAAGRGQAGPVGAGAAAAALGLSHPPRIEALGAAGRQESDGESGAVRGAEPGAGPAVAAAAAPPPRVQTQEAAGRAGA
NRAAAAMELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVPGRHGPQVHPGAVSAAGAAHQ

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