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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>20010_20010_1_CSTF3-HSP90AA1_CSTF3_chr11_33163213_ENST00000323959_HSP90AA1_chr14_102548158_ENST00000334701_length(amino acids)=90AA_BP=75
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEVLMKMTLLLMIPVLL

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>20010_20010_2_CSTF3-HSP90AA1_CSTF3_chr11_33163213_ENST00000524827_HSP90AA1_chr14_102548158_ENST00000334701_length(amino acids)=122AA_BP=13
MSGDGATEQVETRSHCVSQAGLELLDLSDPPASAFQTVGLQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLV

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