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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>23419_23419_1_DNAJB1-EPS15L1_DNAJB1_chr19_14628950_ENST00000254322_EPS15L1_chr19_16472795_ENST00000248070_length(amino acids)=193AA_BP=1
MGGLPLKGDKNPREAASGREWGGPEAEDSTYRGEVCKARGRGLRRFSCRGGDKWVFSTKRVPKPLFTLERVAAVSPEWLEWIGGLGKVCG
TKLAYRCTFTFLPVAVEDLALARVAEHVVGLSDLLELLLGAGLLVLVRVVAQRLAAVGPLDLLVRRAAGQAQRLVVVFTHDPLLRPADPL

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>23419_23419_2_DNAJB1-EPS15L1_DNAJB1_chr19_14628950_ENST00000254322_EPS15L1_chr19_16472795_ENST00000535753_length(amino acids)=161AA_BP=90
MVGGGAGGRRQRVGGPQEGVMGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE

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>23419_23419_3_DNAJB1-EPS15L1_DNAJB1_chr19_14628951_ENST00000254322_EPS15L1_chr19_16472795_ENST00000248070_length(amino acids)=193AA_BP=1
MGGLPLKGDKNPREAASGREWGGPEAEDSTYRGEVCKARGRGLRRFSCRGGDKWVFSTKRVPKPLFTLERVAAVSPEWLEWIGGLGKVCG
TKLAYRCTFTFLPVAVEDLALARVAEHVVGLSDLLELLLGAGLLVLVRVVAQRLAAVGPLDLLVRRAAGQAQRLVVVFTHDPLLRPADPL

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>23419_23419_4_DNAJB1-EPS15L1_DNAJB1_chr19_14628951_ENST00000254322_EPS15L1_chr19_16472795_ENST00000535753_length(amino acids)=161AA_BP=90
MVGGGAGGRRQRVGGPQEGVMGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE

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