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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>2963_2963_1_AGPAT5-FDFT1_AGPAT5_chr8_6590171_ENST00000285518_FDFT1_chr8_11689027_ENST00000220584_length(amino acids)=316AA_BP=192
MAACWPRLRPGRRAGSAGGARCRRAEKMLLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQSMVL
FFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMR
NKLQSYVDAGTPVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNL

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>2963_2963_2_AGPAT5-FDFT1_AGPAT5_chr8_6590171_ENST00000285518_FDFT1_chr8_11689027_ENST00000538689_length(amino acids)=316AA_BP=192
MAACWPRLRPGRRAGSAGGARCRRAEKMLLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQSMVL
FFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMR
NKLQSYVDAGTPVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNL

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