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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>35674_35674_1_HBA1-GATA1_HBA1_chr16_227079_ENST00000320868_GATA1_chrX_48651594_ENST00000376665_length(amino acids)=130AA_BP=49
MVLSPADKTNVKAAWGKVGAHAGEYGAEALESPERPARAQASGGPGQLQAGTQCTNCQTTTTTLWRRNASGDPVCNACGLYYKLHQHYCG

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>35674_35674_2_HBA1-GATA1_HBA1_chr16_227079_ENST00000320868_GATA1_chrX_48651594_ENST00000376670_length(amino acids)=209AA_BP=49
MVLSPADKTNVKAAWGKVGAHAGEYGAEALESPERPARAQASGGPGQLQAGTQCTNCQTTTTTLWRRNASGDPVCNACGLYYKLHQVNRP
LTMRKDGIQTRNRKASGKGKKKRGSSLGGTGAAEGPAGGFMVVAGGSGSGNCGEVASGLTLGPPGTAHLYQGLGPVVLSGPVSHLMPFPG

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>35674_35674_3_HBA1-GATA1_HBA1_chr16_227079_ENST00000397797_GATA1_chrX_48651594_ENST00000376665_length(amino acids)=100AA_BP=19
MGPERPARAQASGGPGQLQAGTQCTNCQTTTTTLWRRNASGDPVCNACGLYYKLHQHYCGGSAQLMRAQSMASRGGVVSFSSCSQNSGQP

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>35674_35674_4_HBA1-GATA1_HBA1_chr16_227079_ENST00000397797_GATA1_chrX_48651594_ENST00000376670_length(amino acids)=179AA_BP=19
MGPERPARAQASGGPGQLQAGTQCTNCQTTTTTLWRRNASGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRGSSLGGT

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