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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>37939_37939_1_HSPB1-KRT19_HSPB1_chr7_75933392_ENST00000248553_KRT19_chr17_39681232_ENST00000361566_length(amino acids)=241AA_BP=1
MSLEQAAVGGNLLLQPRLDVHEPLVLLILPLTISSHIAQLGFNTADQRLDMRQLGSKARLRFCQCVFQGSFTGGCFELYLRKTEDKCIKR
THRWRGRHSQWRQQGWASGLRLYLAAVSSDFAASGPPSWARDSKVTGMVISLDCGVFPREAPGDVAMLVLPLLVLAGDLHHAILGLDRQL

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>37939_37939_2_HSPB1-KRT19_HSPB1_chr7_75933392_ENST00000429938_KRT19_chr17_39681232_ENST00000361566_length(amino acids)=177AA_BP=
MSLEQAAVGGNLLLQPRLDVHEPLVLLILPLTISSHIAQLGFNTADQRLDMRQLGSKARLRFCQCVFQGSFTGGCFELYLRKTEDKCIKR

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