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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>38551_38551_1_IGF2R-SLC22A1_IGF2R_chr6_160412355_ENST00000356956_SLC22A1_chr6_160564573_ENST00000324965_length(amino acids)=207AA_BP=1
MAARPRPGRGPQQSRAVSLAPAAQSGPGAMGAAAGRSPHLGPAPARRPQRSLLLLQLLLLVAAPGSTQAQAAPFPELCSYTWEAVDTKNN
VLYKINICGSVDIVQCGPSSAVCMHDLKTRTYHSVDLHWLNIIIMCVGRMGITIAIQMICLVNAELYPTFVSGVGPACRGSDATSSRDQG

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>38551_38551_2_IGF2R-SLC22A1_IGF2R_chr6_160412355_ENST00000356956_SLC22A1_chr6_160564573_ENST00000366963_length(amino acids)=254AA_BP=1
MAARPRPGRGPQQSRAVSLAPAAQSGPGAMGAAAGRSPHLGPAPARRPQRSLLLLQLLLLVAAPGSTQAQAAPFPELCSYTWEAVDTKNN
VLYKINICGSVDIVQCGPSSAVCMHDLKTRTYHSVDLHWLNIIIMCVGRMGITIAIQMICLVNAELYPTFVRNLGVMVCSSLCDIGGIIT

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>38551_38551_3_IGF2R-SLC22A1_IGF2R_chr6_160412355_ENST00000356956_SLC22A1_chr6_160564573_ENST00000457470_length(amino acids)=184AA_BP=1
MAARPRPGRGPQQSRAVSLAPAAQSGPGAMGAAAGRSPHLGPAPARRPQRSLLLLQLLLLVAAPGSTQAQAAPFPELCSYTWEAVDTKNN
VLYKINICGSVDIVQCGPSSAVCMHDLKTRTYHSVDLHWLNIIIMCVGRMGITIAIQMICLVNAELYPTFVRKAKPKENTIYLKVQTSEP

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