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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>43076_43076_1_KLK3-CDC42EP4_KLK3_chr19_51361401_ENST00000326003_CDC42EP4_chr17_71282209_ENST00000439510_length(amino acids)=346AA_BP=134
MHPESCVTMWVPVVFLTLSVTWIGAAPLILSRIVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNRFLRPGDDSSHDL
MLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEELKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDL
PVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHA

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>43076_43076_2_KLK3-CDC42EP4_KLK3_chr19_51361401_ENST00000360617_CDC42EP4_chr17_71282209_ENST00000439510_length(amino acids)=338AA_BP=126
MWVPVVFLTLSVTWIGAAPLILSRIVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNRFLRPGDDSSHDLMLLRLSEP
AELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEELKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDLPVVPKATY
GLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAA

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>43076_43076_3_KLK3-CDC42EP4_KLK3_chr19_51361401_ENST00000593997_CDC42EP4_chr17_71282209_ENST00000439510_length(amino acids)=338AA_BP=126
MWVPVVFLTLSVTWIGAAPLILSRIVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNRFLRPGDDSSHDLMLLRLSEP
AELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEELKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDLPVVPKATY
GLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAA

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