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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>50176_50176_1_LSM12-ATXN7L3_LSM12_chr17_42141168_ENST00000293406_ATXN7L3_chr17_42272508_ENST00000389384_length(amino acids)=247AA_BP=5
MGARLSPAAAAAAAGRGCTPKMAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEII
NDRTETPPPLASLNVSKQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDL

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>50176_50176_2_LSM12-ATXN7L3_LSM12_chr17_42141168_ENST00000293406_ATXN7L3_chr17_42272508_ENST00000454077_length(amino acids)=247AA_BP=5
MGARLSPAAAAAAAGRGCTPKMAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEII
NDRTETPPPLASLNVSKQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDL

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>50176_50176_3_LSM12-ATXN7L3_LSM12_chr17_42141168_ENST00000585388_ATXN7L3_chr17_42272508_ENST00000389384_length(amino acids)=247AA_BP=5
MGARLSPAAAAAAAGRGCTPKMAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEII
NDRTETPPPLASLNVSKQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDL

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>50176_50176_4_LSM12-ATXN7L3_LSM12_chr17_42141168_ENST00000585388_ATXN7L3_chr17_42272508_ENST00000454077_length(amino acids)=247AA_BP=5
MGARLSPAAAAAAAGRGCTPKMAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEII
NDRTETPPPLASLNVSKQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDL

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