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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>50228_50228_1_LSM7-IQGAP1_LSM7_chr19_2328386_ENST00000252622_IQGAP1_chr15_91030186_ENST00000268182_length(amino acids)=357AA_BP=41
MRRATRRDKMADKEKKKKESILDLSKYIDKTIRVKFQGGREGESSGNLNDPNKEALAKTEVSLTLTNKFDVPGDENAEMDARTILLNTKR
LIVDVIRFQPGETLTEILETPATSEQEAEHQRAMQRRAIRDAKTPDKMKKSKSVKEDSNLTLQEKKEKIQTGLKKLTELGTVDPKNKYQE
LINDIARDIRNQRRYRQRRKAELVKLQQTYAALNSKATFYGEQVDYYKSYIKTCLDNLASKGKVSKKPREMKGKKSKKISLKYTAARLHE

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>50228_50228_2_LSM7-IQGAP1_LSM7_chr19_2328386_ENST00000252622_IQGAP1_chr15_91030186_ENST00000560738_length(amino acids)=357AA_BP=41
MRRATRRDKMADKEKKKKESILDLSKYIDKTIRVKFQGGREGESSGNLNDPNKEALAKTEVSLTLTNKFDVPGDENAEMDARTILLNTKR
LIVDVIRFQPGETLTEILETPATSEQEAEHQRAMQRRAIRDAKTPDKMKKSKSVKEDSNLTLQEKKEKIQTGLKKLTELGTVDPKNKYQE
LINDIARDIRNQRRYRQRRKAELVKLQQTYAALNSKATFYGEQVDYYKSYIKTCLDNLASKGKVSKKPREMKGKKSKKISLKYTAARLHE

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