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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>51622_51622_1_MAPKAPK5-CCDC38_MAPKAPK5_chr12_112280573_ENST00000547305_CCDC38_chr12_96266238_ENST00000344280_length(amino acids)=226AA_BP=89
MSPGAAASAAAAAASLEPPAEAEPAPGSSSPPVPRGGCCPSPRGPGARVPSPLLPRPRGDRAAEQPPPLPAVGAPLSMSEESDMDKAIKE
ILIDSLSKKITQVYKVCIGDAEDDGLNPIQKLVKVESRLVELCDLIESIPKENVEAIERMKQKEWRQKFRDEKMKEKQRHQQERLKAALE

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>51622_51622_2_MAPKAPK5-CCDC38_MAPKAPK5_chr12_112280573_ENST00000550735_CCDC38_chr12_96266238_ENST00000344280_length(amino acids)=276AA_BP=139
MASPGLSGGPARPLHGAPGRGPPRLALPQEPASPAGDEARRRPRGAQHKDLSPGAAASAAAAAASLEPPAEAEPAPGSSSPPVPRGGCCP
SPRGPGARVPSPLLPRPRGDRAAEQPPPLPAVGAPLSMSEESDMDKAIKEILIDSLSKKITQVYKVCIGDAEDDGLNPIQKLVKVESRLV
ELCDLIESIPKENVEAIERMKQKEWRQKFRDEKMKEKQRHQQERLKAALEKAVAQPKKKLGRRLVFHSKPPSGNKQQLPLVNETKTKSQE

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>51622_51622_3_MAPKAPK5-CCDC38_MAPKAPK5_chr12_112280573_ENST00000551404_CCDC38_chr12_96266238_ENST00000344280_length(amino acids)=174AA_BP=37
MLPRPRGDRAAEQPPPLPAVGAPLSMSEESDMDKAIKEILIDSLSKKITQVYKVCIGDAEDDGLNPIQKLVKVESRLVELCDLIESIPKE

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