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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>52157_52157_1_MCC-PPAP2A_MCC_chr5_112630026_ENST00000302475_PPAP2A_chr5_54763977_ENST00000264775_length(amino acids)=233AA_BP=19
MNSGVAMKYGNDSSAELSEIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSIGRLRPHFLDVCDPDWSKI
NCSDGYIEYYICRGNAERVKEGRLSFYSGHSSFSMYCMLFVALYLQARMKGDWARLLRPTLQFGLVAVSIYVGLSRVSDYKHHWSDVLTG

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>52157_52157_2_MCC-PPAP2A_MCC_chr5_112630026_ENST00000302475_PPAP2A_chr5_54763977_ENST00000307259_length(amino acids)=233AA_BP=19
MNSGVAMKYGNDSSAELSEIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSIGRLRPHFLDVCDPDWSKI
NCSDGYIEYYICRGNAERVKEGRLSFYSGHSSFSMYCMLFVALYLQARMKGDWARLLRPTLQFGLVAVSIYVGLSRVSDYKHHWSDVLTG

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