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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>52404_52404_1_MDM2-FGF18_MDM2_chr12_69214154_ENST00000258148_FGF18_chr5_170883543_ENST00000274625_length(amino acids)=144AA_BP=119
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGD

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>52404_52404_2_MDM2-FGF18_MDM2_chr12_69214154_ENST00000258149_FGF18_chr5_170883543_ENST00000274625_length(amino acids)=156AA_BP=131
MRDPRLQARKPRMVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQ

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>52404_52404_3_MDM2-FGF18_MDM2_chr12_69214154_ENST00000350057_FGF18_chr5_170883543_ENST00000274625_length(amino acids)=113AA_BP=88
MCNTNMSVPTDGAVTTSQIPASEQETLVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQAR

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>52404_52404_4_MDM2-FGF18_MDM2_chr12_69214154_ENST00000462284_FGF18_chr5_170883543_ENST00000274625_length(amino acids)=156AA_BP=131
MRDPRLQARKPRMVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQ

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