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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>55748_55748_1_MTMR2-CLNS1A_MTMR2_chr11_95657039_ENST00000346299_CLNS1A_chr11_77340944_ENST00000263309_length(amino acids)=220AA_BP=58
MRPRSVALRPPLLPPCSREDCFSLSLCCPCRAMEKSSSCESLGSQPAAARPPSVDSLSSRLSWLDGSGLGFSLEYPTISLHALSRDRSDC
LGEHLYVMVNAKFEVEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAEGQATLERLEGMLSQSVS

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>55748_55748_2_MTMR2-CLNS1A_MTMR2_chr11_95657039_ENST00000346299_CLNS1A_chr11_77340944_ENST00000525064_length(amino acids)=196AA_BP=58
MRPRSVALRPPLLPPCSREDCFSLSLCCPCRAMEKSSSCESLGSQPAAARPPSVDSLSSRLSWLDGSGLGFSLEYPTISLHALSRDRSDC
LGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKSALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHDGMEVD

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>55748_55748_3_MTMR2-CLNS1A_MTMR2_chr11_95657039_ENST00000346299_CLNS1A_chr11_77340944_ENST00000525428_length(amino acids)=254AA_BP=58
MRPRSVALRPPLLPPCSREDCFSLSLCCPCRAMEKSSSCESLGSQPAAARPPSVDSLSSRLSWLDGSGLGFSLEYPTISLHALSRDRSDC
LGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKSALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGD

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>55748_55748_4_MTMR2-CLNS1A_MTMR2_chr11_95657039_ENST00000346299_CLNS1A_chr11_77340944_ENST00000528364_length(amino acids)=254AA_BP=58
MRPRSVALRPPLLPPCSREDCFSLSLCCPCRAMEKSSSCESLGSQPAAARPPSVDSLSSRLSWLDGSGLGFSLEYPTISLHALSRDRSDC
LGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKSALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGD

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>55748_55748_5_MTMR2-CLNS1A_MTMR2_chr11_95657039_ENST00000346299_CLNS1A_chr11_77340944_ENST00000532069_length(amino acids)=184AA_BP=58
MRPRSVALRPPLLPPCSREDCFSLSLCCPCRAMEKSSSCESLGSQPAAARPPSVDSLSSRLSWLDGSGLGFSLEYPTISLHALSRDRSDC
LGEHLYVMVNAKFEEQGQGDIPTFYTYEEGLSHLTAEGQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDA

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