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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>59028_59028_1_NFYA-TREML2_NFYA_chr6_41058048_ENST00000341376_TREML2_chr6_41162571_ENST00000483722_length(amino acids)=420AA_BP=224
MGFGVRYWSQSARAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQ
VQTLQVVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQ
TAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQAPQTERNIPFTHLDNILKSGTVTTGQAPTSGPDAPFTTGVMVFTPG
LITLPRLLASTRPASKTGYSFTATSTTSQGPRRTMGSQTVTASPSNARDSSAGPESISTKSGDLSTRSPTTGLCLTSRSLLNRLPSMPSI

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>59028_59028_2_NFYA-TREML2_NFYA_chr6_41058048_ENST00000353205_TREML2_chr6_41162571_ENST00000483722_length(amino acids)=391AA_BP=195
MGFGVRYWSQSARAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPI
MVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQT
IVYQPVNADGTILQQAPQTERNIPFTHLDNILKSGTVTTGQAPTSGPDAPFTTGVMVFTPGLITLPRLLASTRPASKTGYSFTATSTTSQ
GPRRTMGSQTVTASPSNARDSSAGPESISTKSGDLSTRSPTTGLCLTSRSLLNRLPSMPSIRHQDVYSTVLGVVLTLLVLMLIMVYGFWK

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