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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>59767_59767_1_NOTCH2-PSMA5_NOTCH2_chr1_120611947_ENST00000256646_PSMA5_chr1_109957985_ENST00000271308_length(amino acids)=249AA_BP=40
MPRRRRRRRRRRRPRRCPPCAPLCCGRCWRSGCAARPPRMLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLI
ADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGS

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>59767_59767_2_NOTCH2-PSMA5_NOTCH2_chr1_120611948_ENST00000256646_PSMA5_chr1_109957985_ENST00000271308_length(amino acids)=249AA_BP=40
MPRRRRRRRRRRRPRRCPPCAPLCCGRCWRSGCAARPPRMLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLI
ADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGS

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