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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>70234_70234_1_PTPN1-P2RX4_PTPN1_chr20_49127127_ENST00000371621_P2RX4_chr12_121659715_ENST00000337233_length(amino acids)=347AA_BP=52
MQRASGLRARRGLERQTAQWAEKEAQQPPWPVMEMEKEFEQIDKSGSWAAIYQEENSLFVMTNVILTMNQTQGLCPEIPDATTVCKSDAS
CTAGSAGTHSNGVSTGRCVAFNGSVKTCEVAAWCPVEDDTHVPQPAFLKAAENFTLLVKNNIWYPKFNFSKRNILPNITTTYLKSCIYDA
KTDPFCPIFRLGKIVENAGHSFQDMAVEGGIMGIQVNWDCNLDRAASLCLPRYSFRRLDTRDVEHNVSPGYNFRFAKYYRDLAGNEQRTL

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>70234_70234_2_PTPN1-P2RX4_PTPN1_chr20_49127127_ENST00000371621_P2RX4_chr12_121659715_ENST00000359949_length(amino acids)=347AA_BP=52
MQRASGLRARRGLERQTAQWAEKEAQQPPWPVMEMEKEFEQIDKSGSWAAIYQEENSLFVMTNVILTMNQTQGLCPEIPDATTVCKSDAS
CTAGSAGTHSNGVSTGRCVAFNGSVKTCEVAAWCPVEDDTHVPQPAFLKAAENFTLLVKNNIWYPKFNFSKRNILPNITTTYLKSCIYDA
KTDPFCPIFRLGKIVENAGHSFQDMAVEGGIMGIQVNWDCNLDRAASLCLPRYSFRRLDTRDVEHNVSPGYNFRFAKYYRDLAGNEQRTL

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>70234_70234_3_PTPN1-P2RX4_PTPN1_chr20_49127127_ENST00000371621_P2RX4_chr12_121659716_ENST00000337233_length(amino acids)=347AA_BP=52
MQRASGLRARRGLERQTAQWAEKEAQQPPWPVMEMEKEFEQIDKSGSWAAIYQEENSLFVMTNVILTMNQTQGLCPEIPDATTVCKSDAS
CTAGSAGTHSNGVSTGRCVAFNGSVKTCEVAAWCPVEDDTHVPQPAFLKAAENFTLLVKNNIWYPKFNFSKRNILPNITTTYLKSCIYDA
KTDPFCPIFRLGKIVENAGHSFQDMAVEGGIMGIQVNWDCNLDRAASLCLPRYSFRRLDTRDVEHNVSPGYNFRFAKYYRDLAGNEQRTL

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>70234_70234_4_PTPN1-P2RX4_PTPN1_chr20_49127127_ENST00000371621_P2RX4_chr12_121659716_ENST00000359949_length(amino acids)=347AA_BP=52
MQRASGLRARRGLERQTAQWAEKEAQQPPWPVMEMEKEFEQIDKSGSWAAIYQEENSLFVMTNVILTMNQTQGLCPEIPDATTVCKSDAS
CTAGSAGTHSNGVSTGRCVAFNGSVKTCEVAAWCPVEDDTHVPQPAFLKAAENFTLLVKNNIWYPKFNFSKRNILPNITTTYLKSCIYDA
KTDPFCPIFRLGKIVENAGHSFQDMAVEGGIMGIQVNWDCNLDRAASLCLPRYSFRRLDTRDVEHNVSPGYNFRFAKYYRDLAGNEQRTL

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