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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>71105_71105_1_R3HDM4-NLRP1_R3HDM4_chr19_900829_ENST00000361574_NLRP1_chr17_5405192_ENST00000262467_length(amino acids)=196AA_BP=177
MPGPVKALPGGGGGDSVRAMVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDLVPKAKGRKSLQ
RLENTQYLLTLLETDGGLPGLEDGDLAPPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGRSKARRRGPGRGEDRRRGRN

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>71105_71105_2_R3HDM4-NLRP1_R3HDM4_chr19_900829_ENST00000587975_NLRP1_chr17_5405192_ENST00000262467_length(amino acids)=175AA_BP=156
MPGPVKALPGGGGGDSVRAMVALENPECGPEAAEGTPGGRRLLRKQHFINQAVRNSDLVPKAKGRKSLQRLENTQYLLTLLETDGGLPGL

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