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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>71188_71188_1_RAB17-HDAC4_RAB17_chr2_238494641_ENST00000264601_HDAC4_chr2_239976529_ENST00000345617_length(amino acids)=253AA_BP=1
MLWISMTFSMERTAFALGLCCKTFSGRGSRAHRRQDTLEVVLHVPKSQAGLTHGATSQENQLEHTGLAGGSPGLGGPVCLCHALFPRPGH
LQGAEEPVITSPQRCYLSPLSPLSGPGEGLLPSTGRTGQEEPLLQWKTAAEQRSRAAASDQSNAHWTPAPRSGLFSSQKVSGQSPQWSCG

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>71188_71188_2_RAB17-HDAC4_RAB17_chr2_238494641_ENST00000264601_HDAC4_chr2_239976529_ENST00000543185_length(amino acids)=253AA_BP=1
MLWISMTFSMERTAFALGLCCKTFSGRGSRAHRRQDTLEVVLHVPKSQAGLTHGATSQENQLEHTGLAGGSPGLGGPVCLCHALFPRPGH
LQGAEEPVITSPQRCYLSPLSPLSGPGEGLLPSTGRTGQEEPLLQWKTAAEQRSRAAASDQSNAHWTPAPRSGLFSSQKVSGQSPQWSCG

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