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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>72865_72865_1_RBM38-DNAJC5B_RBM38_chr20_55968389_ENST00000356208_DNAJC5B_chr8_66988895_ENST00000276570_length(amino acids)=330AA_BP=171
MDGRPSLPRALPAAPHERSPARPGSVGGGAPPMLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFG
DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGKLALKHHPD
KNPDDPAATEKFKEINNAHAILTDISKRSIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAKALFVIVGLLTGCYFCCCLCCCCNCCCGH

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>72865_72865_2_RBM38-DNAJC5B_RBM38_chr20_55968389_ENST00000371219_DNAJC5B_chr8_66988895_ENST00000276570_length(amino acids)=273AA_BP=114
MVGKSRRPPKLPSGFIFALSPQGIIFVLEGHISQALNFDGRSWNPGGIFVGEPQVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKP
RSLQTGFAIGVQQLHPTLIQRTYGKLALKHHPDKNPDDPAATEKFKEINNAHAILTDISKRSIYDKYGSLGLYVAEQFGDENVNTYFMLS
SWWAKALFVIVGLLTGCYFCCCLCCCCNCCCGHCRPESSVPEEDFYVSPEDLEEQIKSDMEKDVDFPVFLQPTNANEKTQLIKEGSRSYC

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