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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>7410_7410_1_ATF2-CYTIP_ATF2_chr2_175994865_ENST00000392544_CYTIP_chr2_158283932_ENST00000540637_length(amino acids)=214AA_BP=13
MTNPFYVLRLDVARIETLNGTMILKRTELEAKLQVLKQTLKQKWVEYRSLQLQEHRLLHGDAANCPSLENMDLDELSLFGPLPGPGPALV
DRNRLSSESSCKSWLSSMTMDSEDGYQTCVSEDSSRGAFSRQTSTDDECFIPKEGDDFLRRSSSRRNRSISNTSSGSMSPLWEGNLSSMF

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>7410_7410_2_ATF2-CYTIP_ATF2_chr2_175994865_ENST00000426833_CYTIP_chr2_158283932_ENST00000540637_length(amino acids)=214AA_BP=13
MTNPFYVLRLDVARIETLNGTMILKRTELEAKLQVLKQTLKQKWVEYRSLQLQEHRLLHGDAANCPSLENMDLDELSLFGPLPGPGPALV
DRNRLSSESSCKSWLSSMTMDSEDGYQTCVSEDSSRGAFSRQTSTDDECFIPKEGDDFLRRSSSRRNRSISNTSSGSMSPLWEGNLSSMF

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>7410_7410_3_ATF2-CYTIP_ATF2_chr2_175994865_ENST00000538946_CYTIP_chr2_158283932_ENST00000540637_length(amino acids)=214AA_BP=13
MTNPFYVLRLDVARIETLNGTMILKRTELEAKLQVLKQTLKQKWVEYRSLQLQEHRLLHGDAANCPSLENMDLDELSLFGPLPGPGPALV
DRNRLSSESSCKSWLSSMTMDSEDGYQTCVSEDSSRGAFSRQTSTDDECFIPKEGDDFLRRSSSRRNRSISNTSSGSMSPLWEGNLSSMF

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