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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>77164_77164_1_RPLP2-MNDA_RPLP2_chr11_810303_ENST00000321153_MNDA_chr1_158817536_ENST00000368141_length(amino acids)=229AA_BP=1
MLHFSFHISINIHWSFLVFLGLDDLDEAVTSTHQFQLAVNCSQLKAEESKFISFLTLDIVPFSTPHYIHGSCIILYFINCVLLSRSSSAS
IPTLSKIFLRRRLRRRRRRSLTRATSVATGRKRKAPTQEAGLNRYPEGSGTRARRRMRRLRVTSRGAQPMTTGRESLTPSPSPFPAPVRH

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>77164_77164_2_RPLP2-MNDA_RPLP2_chr11_810303_ENST00000530797_MNDA_chr1_158817536_ENST00000368141_length(amino acids)=98AA_BP=1
MLHFSFHISINIHWSFLVFLGLDDLDEAVTSTHQFQLAVNCSQLKAEESKFISFLTLDIVPFSTPHYIHGSCIILYFINCVLLSRSSSAS

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