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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>79754_79754_1_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000309263_LDHC_chr11_18451284_ENST00000280704_length(amino acids)=473AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG
TDSDKEHWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGVSDVVKINLN

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>79754_79754_2_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000309263_LDHC_chr11_18451284_ENST00000541669_length(amino acids)=473AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG
TDSDKEHWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGVSDVVKINLN

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>79754_79754_3_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000309263_LDHC_chr11_18451284_ENST00000544105_length(amino acids)=382AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG

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>79754_79754_4_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000450649_LDHC_chr11_18451284_ENST00000280704_length(amino acids)=465AA_BP=215
MGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGRQCEDIDEC
GNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSEEGLSCMNK
DHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKILVVS
NPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHW
KNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGVSDVVKINLNSEEEALFK

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>79754_79754_5_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000450649_LDHC_chr11_18451284_ENST00000541669_length(amino acids)=465AA_BP=215
MGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGRQCEDIDEC
GNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSEEGLSCMNK
DHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKILVVS
NPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHW
KNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGVSDVVKINLNSEEEALFK

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>79754_79754_6_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000450649_LDHC_chr11_18451284_ENST00000544105_length(amino acids)=374AA_BP=215
MGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGRQCEDIDEC
GNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSEEGLSCMNK
DHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKILVVS
NPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHW

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>79754_79754_7_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000457346_LDHC_chr11_18451284_ENST00000280704_length(amino acids)=473AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG
TDSDKEHWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGVSDVVKINLN

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>79754_79754_8_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000457346_LDHC_chr11_18451284_ENST00000541669_length(amino acids)=473AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG
TDSDKEHWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGVSDVVKINLN

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>79754_79754_9_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000457346_LDHC_chr11_18451284_ENST00000544105_length(amino acids)=382AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG

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>79754_79754_10_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000520467_LDHC_chr11_18451284_ENST00000280704_length(amino acids)=473AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG
TDSDKEHWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGVSDVVKINLN

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>79754_79754_11_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000520467_LDHC_chr11_18451284_ENST00000541669_length(amino acids)=473AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG
TDSDKEHWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGVSDVVKINLN

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>79754_79754_12_SCUBE2-LDHC_SCUBE2_chr11_9090917_ENST00000520467_LDHC_chr11_18451284_ENST00000544105_length(amino acids)=382AA_BP=223
MPATAEPSMGVAGRNRPGAAWAVLLLLLLLPPLLLLAGAVPPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR
QCEDIDECGNELNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDVDECLENNGGCQHTCVNVMGSYECCCKEGFFLSDNQHTCIHRSE
EGLSCMNKDHGCSHICKEAPRGSVACECRPGFELAKNQRDCIYYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSP
DCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLG

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