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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>80279_80279_1_SEMA3C-CNTNAP2_SEMA3C_chr7_80545995_ENST00000265361_CNTNAP2_chr7_148112509_ENST00000361727_length(amino acids)=119AA_BP=53
MISFNLGIFPWILTCISEEMAFRTICVLVGVFICSICVKGSSQPQARVYLTFDGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAE

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>80279_80279_2_SEMA3C-CNTNAP2_SEMA3C_chr7_80545995_ENST00000265361_CNTNAP2_chr7_148112509_ENST00000538075_length(amino acids)=119AA_BP=53
MISFNLGIFPWILTCISEEMAFRTICVLVGVFICSICVKGSSQPQARVYLTFDGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAE

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