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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>82135_82135_1_SKIV2L2-PCDHGC3_SKIV2L2_chr5_54624639_ENST00000230640_PCDHGC3_chr5_140884960_ENST00000308177_length(amino acids)=283AA_BP=179
MLSLLPKMADAFGDELFSVFEGDSTTAAGTKKDKEKDKGKWKGPPGSADKAGKRFDGKLQSESTNNGKNKRDVDFEGTDEPIFGKKPRIE
ESITEDLSLADLMPRVKVQSVETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCADS
QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGG

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>82135_82135_2_SKIV2L2-PCDHGC3_SKIV2L2_chr5_54624639_ENST00000545714_PCDHGC3_chr5_140884960_ENST00000308177_length(amino acids)=175AA_BP=71
MEGASRVCRQGRVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCADSQNGDDTGTWPNNQFDTEM

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