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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>86390_86390_1_SRGAP3-JAGN1_SRGAP3_chr3_9290569_ENST00000360413_JAGN1_chr3_9934599_ENST00000307768_length(amino acids)=144AA_BP=
MIYVHLVIWLLLVAKMSVGHLRLLSHDQVAMPYQWEYPYLLSILPSLLGLLSFPRNNISYLVLSMISMGLFSIAPLIYGSMEMFPAAQQL

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>86390_86390_2_SRGAP3-JAGN1_SRGAP3_chr3_9290569_ENST00000383836_JAGN1_chr3_9934599_ENST00000307768_length(amino acids)=144AA_BP=
MIYVHLVIWLLLVAKMSVGHLRLLSHDQVAMPYQWEYPYLLSILPSLLGLLSFPRNNISYLVLSMISMGLFSIAPLIYGSMEMFPAAQQL

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