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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>87068_87068_1_STAB2-HMGA2_STAB2_chr12_104014331_ENST00000388887_HMGA2_chr12_66345163_ENST00000393577_length(amino acids)=184AA_BP=149
MAQRRSKYFLMMLQHLVIFCLGLVVQNFCSPAETTGQARRCDRKSLLTIRTECRSCALNLGVKCPDGYTMITSGSVGVRDCRYTFEVRTY
SLSLPGCRHICRKDYLQPRCCPGRWGPDCIECPGGAGSPCNGRGSCAEGMEGNGTCSCQPQQVVQKKPAQVNVALPGKDHPGNLIYLLFS

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>87068_87068_2_STAB2-HMGA2_STAB2_chr12_104014331_ENST00000388887_HMGA2_chr12_66345163_ENST00000403681_length(amino acids)=175AA_BP=149
MAQRRSKYFLMMLQHLVIFCLGLVVQNFCSPAETTGQARRCDRKSLLTIRTECRSCALNLGVKCPDGYTMITSGSVGVRDCRYTFEVRTY

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