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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>89715_89715_1_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000267811_NPAS1_chr19_47542294_ENST00000439365_length(amino acids)=270AA_BP=
MGDPGCRRVRRRQLCQSSVPLPRQPGARGPRVGQAQGRVKGLRERGARTQPLQVRVHQAQLRGAVADGAGCAQAPHHRRQEARVQEGGRG
VPGRRQAPWPHRILLQDPCPDDRGELGPRCGRVAGGILVATVLGAFGFPRAGLHFDAFALGLGGLVLRWGSLLPFRRRLRLCGLWPRAGC
LLTGHAGWKLEGIQRSLATLGLAEHVADPKHMVLPGALPAPSHCGHRLQPHEAPGTSPRGSGGSSWRPVRGQTGSSCGPPALRAPGPCGR

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>89715_89715_2_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000267811_NPAS1_chr19_47542294_ENST00000449844_length(amino acids)=410AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI
HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK
GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP
AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG

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>89715_89715_3_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000267811_NPAS1_chr19_47542294_ENST00000602189_length(amino acids)=411AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKQV
IHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLD
KGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAA
PAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTP

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>89715_89715_4_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000267811_NPAS1_chr19_47542294_ENST00000602212_length(amino acids)=410AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI
HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK
GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP
AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG

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>89715_89715_5_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000333725_NPAS1_chr19_47542294_ENST00000439365_length(amino acids)=259AA_BP=
MLVRAESATTWTWGPQSWWAAAATSLSTDRTPRGSARATWTRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLP
ASVACEEASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPW

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>89715_89715_6_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000333725_NPAS1_chr19_47542294_ENST00000449844_length(amino acids)=410AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI
HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK
GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP
AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG

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>89715_89715_7_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000333725_NPAS1_chr19_47542294_ENST00000602189_length(amino acids)=411AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKQV
IHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLD
KGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAA
PAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTP

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>89715_89715_8_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000333725_NPAS1_chr19_47542294_ENST00000602212_length(amino acids)=410AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI
HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK
GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP
AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG

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>89715_89715_9_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000438423_NPAS1_chr19_47542294_ENST00000439365_length(amino acids)=270AA_BP=
MGDPGCRRVRRRQLCQSSVPLPRQPGARGPRVGQAQGRVKGLRERGARTQPLQVRVHQAQLRGAVADGAGCAQAPHHRRQEARVQEGGRG
VPGRRQAPWPHRILLQDPCPDDRGELGPRCGRVAGGILVATVLGAFGFPRAGLHFDAFALGLGGLVLRWGSLLPFRRRLRLCGLWPRAGC
LLTGHAGWKLEGIQRSLATLGLAEHVADPKHMVLPGALPAPSHCGHRLQPHEAPGTSPRGSGGSSWRPVRGQTGSSCGPPALRAPGPCGR

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>89715_89715_10_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000438423_NPAS1_chr19_47542294_ENST00000449844_length(amino acids)=422AA_BP=61
MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR
GLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAT
RIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTE
PEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGF

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>89715_89715_11_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000438423_NPAS1_chr19_47542294_ENST00000602189_length(amino acids)=423AA_BP=61
MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR
GLHVKASGYKQVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDA
TRIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPT
EPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAG

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>89715_89715_12_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000438423_NPAS1_chr19_47542294_ENST00000602212_length(amino acids)=422AA_BP=61
MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR
GLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAT
RIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTE
PEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGF

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>89715_89715_13_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000452095_NPAS1_chr19_47542294_ENST00000439365_length(amino acids)=270AA_BP=
MGDPGCRRVRRRQLCQSSVPLPRQPGARGPRVGQAQGRVKGLRERGARTQPLQVRVHQAQLRGAVADGAGCAQAPHHRRQEARVQEGGRG
VPGRRQAPWPHRILLQDPCPDDRGELGPRCGRVAGGILVATVLGAFGFPRAGLHFDAFALGLGGLVLRWGSLLPFRRRLRLCGLWPRAGC
LLTGHAGWKLEGIQRSLATLGLAEHVADPKHMVLPGALPAPSHCGHRLQPHEAPGTSPRGSGGSSWRPVRGQTGSSCGPPALRAPGPCGR

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>89715_89715_14_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000452095_NPAS1_chr19_47542294_ENST00000449844_length(amino acids)=410AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI
HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK
GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP
AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG

--------------------------------------------------------------

>89715_89715_15_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000452095_NPAS1_chr19_47542294_ENST00000602189_length(amino acids)=411AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKQV
IHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLD
KGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAA
PAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTP

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>89715_89715_16_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000452095_NPAS1_chr19_47542294_ENST00000602212_length(amino acids)=410AA_BP=49
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI
HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK
GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP
AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG

--------------------------------------------------------------

>89715_89715_17_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000557843_NPAS1_chr19_47542294_ENST00000439365_length(amino acids)=259AA_BP=
MLVRAESATTWTWGPQSWWAAAATSLSTDRTPRGSARATWTRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLP
ASVACEEASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPW

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>89715_89715_18_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000557843_NPAS1_chr19_47542294_ENST00000449844_length(amino acids)=422AA_BP=61
MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR
GLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAT
RIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTE
PEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGF

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>89715_89715_19_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000557843_NPAS1_chr19_47542294_ENST00000602189_length(amino acids)=423AA_BP=61
MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR
GLHVKASGYKQVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDA
TRIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPT
EPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAG

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>89715_89715_20_TCF12-NPAS1_TCF12_chr15_57213296_ENST00000557843_NPAS1_chr19_47542294_ENST00000602212_length(amino acids)=422AA_BP=61
MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR
GLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAT
RIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTE
PEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGF

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