FusionNeoAntigen

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Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>91599_91599_1_TMEM123-MMP20_TMEM123_chr11_102319542_ENST00000398136_MMP20_chr11_102464326_ENST00000260228_length(amino acids)=284AA_BP=164
MPFPKRKETARGFWGSQARACEGGREPSRHAQNPEPAPAPPSPAPPPRLRTRRPLQAPLLRPIWSFGGQAAGGETCAAEGEAEPAPAAQR
SRSRRRHLGWEPTRLPHPALGTMGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANSTGPHYWITRGFQMQGPP
RTIYDFGFPRHVQQIDAAVYLREPQKTLFFVGDEYYSYDERKRKMEKDYPKNTEEEFSGVNGQIDAAVELNGYIYFFSGPKTYKYDTEKE

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>91599_91599_2_TMEM123-MMP20_TMEM123_chr11_102319543_ENST00000398136_MMP20_chr11_102464326_ENST00000260228_length(amino acids)=284AA_BP=164
MPFPKRKETARGFWGSQARACEGGREPSRHAQNPEPAPAPPSPAPPPRLRTRRPLQAPLLRPIWSFGGQAAGGETCAAEGEAEPAPAAQR
SRSRRRHLGWEPTRLPHPALGTMGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANSTGPHYWITRGFQMQGPP
RTIYDFGFPRHVQQIDAAVYLREPQKTLFFVGDEYYSYDERKRKMEKDYPKNTEEEFSGVNGQIDAAVELNGYIYFFSGPKTYKYDTEKE

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>91599_91599_3_TMEM123-MMP20_TMEM123_chr11_102319543_ENST00000398136_MMP20_chr11_102480761_ENST00000260228_length(amino acids)=473AA_BP=164
MPFPKRKETARGFWGSQARACEGGREPSRHAQNPEPAPAPPSPAPPPRLRTRRPLQAPLLRPIWSFGGQAAGGETCAAEGEAEPAPAAQR
SRSRRRHLGWEPTRLPHPALGTMGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANSTDHGDSYPFDGPRGTLA
HAFAPGEGLGGDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYGPRKVFLGKP
TLPHAPHHKPSIPDLCDSSSSFDAVTMLGKELLLFKDRIFWRRQVHLRTGIRPSTITSSFPQLMSNVDAAYEVAERGTAYFFKGPHYWIT
RGFQMQGPPRTIYDFGFPRHVQQIDAAVYLREPQKTLFFVGDEYYSYDERKRKMEKDYPKNTEEEFSGVNGQIDAAVELNGYIYFFSGPK

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