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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>98097_98097_1_VILL-ITGA9_VILL_chr3_38035463_ENST00000283713_ITGA9_chr3_37818883_ENST00000264741_length(amino acids)=247AA_BP=57
MLFLVSSHIPAWPAMDISKGLPGMQGGLHIWISENRKMVPVPEGAYGNFFEEHCYVILHVGQEKGNCSFQKNPTPCIIPQEQENIFHTIF
AFFTKSGRKVLDCEKPGISCLTAHCNFSALAKEESRTIDIYMLLNTEILKKDSSSVIQFMSRAKVKVDPALRVVEIAHGNPEEVTVVFEA

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>98097_98097_2_VILL-ITGA9_VILL_chr3_38035463_ENST00000383759_ITGA9_chr3_37818883_ENST00000264741_length(amino acids)=247AA_BP=57
MLFLVSSHIPAWPAMDISKGLPGMQGGLHIWISENRKMVPVPEGAYGNFFEEHCYVILHVGQEKGNCSFQKNPTPCIIPQEQENIFHTIF
AFFTKSGRKVLDCEKPGISCLTAHCNFSALAKEESRTIDIYMLLNTEILKKDSSSVIQFMSRAKVKVDPALRVVEIAHGNPEEVTVVFEA

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