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Center for Computational Systems Medicine level2
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein Structure

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pLDDT scores

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Ramachandran Plot of Fusion Protein Structure

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:BTBD2-OAS2

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: BTBD2-OAS2
FusionPDB ID: 10461
FusionGDB2.0 ID: 10461
HgeneTgene
Gene symbol

BTBD2

OAS2

Gene ID

55643

4939

Gene nameBTB domain containing 22'-5'-oligoadenylate synthetase 2
Synonyms--
Cytomap

19p13.3

12q24.13

Type of geneprotein-codingprotein-coding
DescriptionBTB/POZ domain-containing protein 2BTB (POZ) domain containing 22'-5'-oligoadenylate synthase 2(2'-5')oligo(A) synthetase 22'-5'-oligoadenylate synthetase 2, 69/71kDa2-5A synthase 2p69 OAS / p71 OAS
Modification date2020032720200313
UniProtAcc

Q9BX70

.
Ensembl transtripts involved in fusion geneENST idsENST00000255608, ENST00000590646, 
ENST00000449768, ENST00000342315, 
ENST00000392583, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score13 X 11 X 11=15734 X 4 X 4=64
# samples 185
** MAII scorelog2(18/1573*10)=-3.12744985908601
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/64*10)=-0.356143810225275
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: BTBD2 [Title/Abstract] AND OAS2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)BTBD2(1993019)-OAS2(113424843), # samples:3
Anticipated loss of major functional domain due to fusion event.BTBD2-OAS2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
BTBD2-OAS2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
BTBD2-OAS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
BTBD2-OAS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
BTBD2-OAS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across BTBD2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across OAS2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LGGTCGA-FG-A4MU-01BBTBD2chr19

1993018

-OAS2chr12

113424842

+
ChimerDB4LGGTCGA-FG-A4MU-01BBTBD2chr19

1993019

-OAS2chr12

113424843

+
ChimerDB4LGGTCGA-FG-A4MUBTBD2chr19

1993018

-OAS2chr12

113424842

+
ChimerDB4LGGTCGA-FG-A4MUBTBD2chr19

1993019

-OAS2chr12

113424843

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000255608BTBD2chr191993019-ENST00000342315OAS2chr12113424843+3923701172683888
ENST00000255608BTBD2chr191993019-ENST00000392583OAS2chr12113424843+5051701172587856
ENST00000255608BTBD2chr191993018-ENST00000342315OAS2chr12113424842+3923701172683888
ENST00000255608BTBD2chr191993018-ENST00000392583OAS2chr12113424842+5051701172587856

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000255608ENST00000342315BTBD2chr191993019-OAS2chr12113424843+0.0014815970.9985184
ENST00000255608ENST00000392583BTBD2chr191993019-OAS2chr12113424843+0.0010926160.9989073
ENST00000255608ENST00000342315BTBD2chr191993018-OAS2chr12113424842+0.0014815970.9985184
ENST00000255608ENST00000392583BTBD2chr191993018-OAS2chr12113424842+0.0010926160.9989073

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>10461_10461_1_BTBD2-OAS2_BTBD2_chr19_1993018_ENST00000255608_OAS2_chr12_113424842_ENST00000342315_length(amino acids)=888AA_BP=562
MAAGGSGGRASCPPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGAERAEEAAGPGAAALQR
EAAYNWQASKPTVQERFAFLFNNEVLCDVHFLVGKGLSSQRIPAHRFVLAVGSAVFDAMFNGGMATTSTEIELPDVEPAAFLALLKFLYS
DEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLKKNLRADNAFMLLTQGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKT
GDKLKFCLFTKWLKNNFEIQKSLDGFTIQVFTKNQRISFEVLAAFNALSLNDNPSPWIYRELKRSLDKTNASPGEFAVCFTELQQKFFDN
RPGKLKDLILLIKHWHQQCQKKIKDLPSLSPYALELLTVYAWEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILL
HQLQSARPVILDPVDPTNNVSGDKICWQWLKKEAQTWLTSPNLDNELPAPSWNVLPAPLFTTPGHLLDKFIKEFLQPNKCFLEQIDSAVN
IIRTFLKENCFRQSTAKIQIVRGGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFEPPKWKA
PRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPGGEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYK
ECERKLKPKGSLPPKYALELLTIYAWEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVILDPAEP

--------------------------------------------------------------

>10461_10461_2_BTBD2-OAS2_BTBD2_chr19_1993018_ENST00000255608_OAS2_chr12_113424842_ENST00000392583_length(amino acids)=856AA_BP=562
MAAGGSGGRASCPPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGAERAEEAAGPGAAALQR
EAAYNWQASKPTVQERFAFLFNNEVLCDVHFLVGKGLSSQRIPAHRFVLAVGSAVFDAMFNGGMATTSTEIELPDVEPAAFLALLKFLYS
DEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLKKNLRADNAFMLLTQGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKT
GDKLKFCLFTKWLKNNFEIQKSLDGFTIQVFTKNQRISFEVLAAFNALSLNDNPSPWIYRELKRSLDKTNASPGEFAVCFTELQQKFFDN
RPGKLKDLILLIKHWHQQCQKKIKDLPSLSPYALELLTVYAWEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILL
HQLQSARPVILDPVDPTNNVSGDKICWQWLKKEAQTWLTSPNLDNELPAPSWNVLPAPLFTTPGHLLDKFIKEFLQPNKCFLEQIDSAVN
IIRTFLKENCFRQSTAKIQIVRGGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFEPPKWKA
PRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPGGEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYK
ECERKLKPKGSLPPKYALELLTIYAWEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVILDPAEP

--------------------------------------------------------------

>10461_10461_3_BTBD2-OAS2_BTBD2_chr19_1993019_ENST00000255608_OAS2_chr12_113424843_ENST00000342315_length(amino acids)=888AA_BP=562
MAAGGSGGRASCPPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGAERAEEAAGPGAAALQR
EAAYNWQASKPTVQERFAFLFNNEVLCDVHFLVGKGLSSQRIPAHRFVLAVGSAVFDAMFNGGMATTSTEIELPDVEPAAFLALLKFLYS
DEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLKKNLRADNAFMLLTQGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKT
GDKLKFCLFTKWLKNNFEIQKSLDGFTIQVFTKNQRISFEVLAAFNALSLNDNPSPWIYRELKRSLDKTNASPGEFAVCFTELQQKFFDN
RPGKLKDLILLIKHWHQQCQKKIKDLPSLSPYALELLTVYAWEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILL
HQLQSARPVILDPVDPTNNVSGDKICWQWLKKEAQTWLTSPNLDNELPAPSWNVLPAPLFTTPGHLLDKFIKEFLQPNKCFLEQIDSAVN
IIRTFLKENCFRQSTAKIQIVRGGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFEPPKWKA
PRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPGGEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYK
ECERKLKPKGSLPPKYALELLTIYAWEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVILDPAEP

--------------------------------------------------------------

>10461_10461_4_BTBD2-OAS2_BTBD2_chr19_1993019_ENST00000255608_OAS2_chr12_113424843_ENST00000392583_length(amino acids)=856AA_BP=562
MAAGGSGGRASCPPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGAERAEEAAGPGAAALQR
EAAYNWQASKPTVQERFAFLFNNEVLCDVHFLVGKGLSSQRIPAHRFVLAVGSAVFDAMFNGGMATTSTEIELPDVEPAAFLALLKFLYS
DEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLKKNLRADNAFMLLTQGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKT
GDKLKFCLFTKWLKNNFEIQKSLDGFTIQVFTKNQRISFEVLAAFNALSLNDNPSPWIYRELKRSLDKTNASPGEFAVCFTELQQKFFDN
RPGKLKDLILLIKHWHQQCQKKIKDLPSLSPYALELLTVYAWEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILL
HQLQSARPVILDPVDPTNNVSGDKICWQWLKKEAQTWLTSPNLDNELPAPSWNVLPAPLFTTPGHLLDKFIKEFLQPNKCFLEQIDSAVN
IIRTFLKENCFRQSTAKIQIVRGGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFEPPKWKA
PRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPGGEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYK
ECERKLKPKGSLPPKYALELLTIYAWEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVILDPAEP

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:1993019/chr12:113424843)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
BTBD2

Q9BX70

.
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneBTBD2chr19:1993018chr12:113424842ENST00000255608-3941_54228.0526.0Compositional biasNote=Poly-Ala
HgeneBTBD2chr19:1993019chr12:113424843ENST00000255608-3941_54228.0526.0Compositional biasNote=Poly-Ala
HgeneBTBD2chr19:1993018chr12:113424842ENST00000255608-39117_187228.0526.0DomainBTB
HgeneBTBD2chr19:1993019chr12:113424843ENST00000255608-39117_187228.0526.0DomainBTB
TgeneOAS2chr19:1993018chr12:113424842ENST00000342315011326_34659.0720.0Compositional biasNote=Pro-rich (linker)
TgeneOAS2chr19:1993018chr12:113424842ENST00000392583010326_34659.0688.0Compositional biasNote=Pro-rich (linker)
TgeneOAS2chr19:1993018chr12:113424842ENST0000044976802326_34659.0173.0Compositional biasNote=Pro-rich (linker)
TgeneOAS2chr19:1993019chr12:113424843ENST00000342315011326_34659.0720.0Compositional biasNote=Pro-rich (linker)
TgeneOAS2chr19:1993019chr12:113424843ENST00000392583010326_34659.0688.0Compositional biasNote=Pro-rich (linker)
TgeneOAS2chr19:1993019chr12:113424843ENST0000044976802326_34659.0173.0Compositional biasNote=Pro-rich (linker)
TgeneOAS2chr19:1993018chr12:113424842ENST00000342315011343_68359.0720.0RegionNote=OAS domain 2
TgeneOAS2chr19:1993018chr12:113424842ENST00000392583010343_68359.0688.0RegionNote=OAS domain 2
TgeneOAS2chr19:1993018chr12:113424842ENST0000044976802343_68359.0173.0RegionNote=OAS domain 2
TgeneOAS2chr19:1993019chr12:113424843ENST00000342315011343_68359.0720.0RegionNote=OAS domain 2
TgeneOAS2chr19:1993019chr12:113424843ENST00000392583010343_68359.0688.0RegionNote=OAS domain 2
TgeneOAS2chr19:1993019chr12:113424843ENST0000044976802343_68359.0173.0RegionNote=OAS domain 2

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneOAS2chr19:1993018chr12:113424842ENST0000034231501111_33559.0720.0RegionNote=OAS domain 1
TgeneOAS2chr19:1993018chr12:113424842ENST0000039258301011_33559.0688.0RegionNote=OAS domain 1
TgeneOAS2chr19:1993018chr12:113424842ENST000004497680211_33559.0173.0RegionNote=OAS domain 1
TgeneOAS2chr19:1993019chr12:113424843ENST0000034231501111_33559.0720.0RegionNote=OAS domain 1
TgeneOAS2chr19:1993019chr12:113424843ENST0000039258301011_33559.0688.0RegionNote=OAS domain 1
TgeneOAS2chr19:1993019chr12:113424843ENST000004497680211_33559.0173.0RegionNote=OAS domain 1


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Fusion Protein Structures

check button PDB and CIF files of the predicted fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Fusion protein PDB link (fusion AA seq ID in FusionPDB)HgeneHchrHbpHstrandTgeneTchrTbpTstrandAA seqLen(AA seq)
PDB file >>>1680_BTBD2_1993019_OAS2_113424843_ranked_0.pdbBTBD219930181993019ENST00000392583OAS2chr12113424843+
MAAGGSGGRASCPPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGAERAEEAAGPGAAALQR
EAAYNWQASKPTVQERFAFLFNNEVLCDVHFLVGKGLSSQRIPAHRFVLAVGSAVFDAMFNGGMATTSTEIELPDVEPAAFLALLKFLYS
DEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLKKNLRADNAFMLLTQGGSYGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKT
GDKLKFCLFTKWLKNNFEIQKSLDGFTIQVFTKNQRISFEVLAAFNALSLNDNPSPWIYRELKRSLDKTNASPGEFAVCFTELQQKFFDN
RPGKLKDLILLIKHWHQQCQKKIKDLPSLSPYALELLTVYAWEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILL
HQLQSARPVILDPVDPTNNVSGDKICWQWLKKEAQTWLTSPNLDNELPAPSWNVLPAPLFTTPGHLLDKFIKEFLQPNKCFLEQIDSAVN
IIRTFLKENCFRQSTAKIQIVRGGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFEPPKWKA
PRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPGGEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYK
ECERKLKPKGSLPPKYALELLTIYAWEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVILDPAEP
888


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pLDDT score distribution

check button pLDDT score distribution of the predicted wild-type structures of two partner proteins from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
BTBD2_pLDDT.png
all structure
all structure
OAS2_pLDDT.png
all structure
all structure

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
all structure


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Ramachandran Plot of Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.
Fusion AA seq ID in FusionPDB and their Ramachandran plots

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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
BTBD2
OAS2


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to BTBD2-OAS2


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to BTBD2-OAS2


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource