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Fusion Protein:CD274-KDM4C |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: CD274-KDM4C | FusionPDB ID: 14432 | FusionGDB2.0 ID: 14432 | Hgene | Tgene | Gene symbol | CD274 | KDM4C | Gene ID | 29126 | 23081 |
Gene name | CD274 molecule | lysine demethylase 4C | |
Synonyms | B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1|hPD-L1 | GASC1|JHDM3C|JMJD2C|TDRD14C | |
Cytomap | 9p24.1 | 9p24.1 | |
Type of gene | protein-coding | protein-coding | |
Description | programmed cell death 1 ligand 1B7 homolog 1CD274 antigenPDCD1 ligand 1 | lysine-specific demethylase 4CJmjC domain-containing histone demethylation protein 3Cgene amplified in squamous cell carcinoma 1 proteinjumonji domain-containing protein 2Clysine (K)-specific demethylase 4Ctudor domain containing 14C | |
Modification date | 20200329 | 20200329 | |
UniProtAcc | Q9NZQ7 | Q9H3R0 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000381573, ENST00000381577, ENST00000498261, | ENST00000489243, ENST00000381306, ENST00000381309, ENST00000401787, ENST00000442236, ENST00000536108, ENST00000543771, ENST00000428870, ENST00000535193, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 3 X 2 X 2=12 | 22 X 22 X 7=3388 |
# samples | 3 | 26 | |
** MAII score | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(26/3388*10)=-3.70385034630374 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: CD274 [Title/Abstract] AND KDM4C [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | CD274(5465606)-KDM4C(6792971), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | CD274-KDM4C seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CD274-KDM4C seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CD274-KDM4C seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. CD274-KDM4C seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CD274 | GO:0006955 | immune response | 10581077 |
Hgene | CD274 | GO:0007165 | signal transduction | 10581077 |
Hgene | CD274 | GO:0007166 | cell surface receptor signaling pathway | 10581077 |
Hgene | CD274 | GO:0031295 | T cell costimulation | 10581077 |
Hgene | CD274 | GO:0034097 | response to cytokine | 17489864 |
Hgene | CD274 | GO:1905399 | regulation of activated CD4-positive, alpha-beta T cell apoptotic process | 24187568 |
Hgene | CD274 | GO:1905404 | positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process | 24187568 |
Hgene | CD274 | GO:2000562 | negative regulation of CD4-positive, alpha-beta T cell proliferation | 24691993 |
Hgene | CD274 | GO:2001181 | positive regulation of interleukin-10 secretion | 10581077 |
Tgene | KDM4C | GO:0006357 | regulation of transcription by RNA polymerase II | 17277772 |
Tgene | KDM4C | GO:0033169 | histone H3-K9 demethylation | 18066052|21914792 |
Tgene | KDM4C | GO:0070544 | histone H3-K36 demethylation | 21914792 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-BR-6706 | CD274 | chr9 | 5465606 | + | KDM4C | chr9 | 6792971 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000381573 | CD274 | chr9 | 5465606 | + | ENST00000535193 | KDM4C | chr9 | 6792971 | + | 3826 | 556 | 9 | 3014 | 1001 |
ENST00000381577 | CD274 | chr9 | 5465606 | + | ENST00000535193 | KDM4C | chr9 | 6792971 | + | 4146 | 876 | 86 | 3334 | 1082 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000381573 | ENST00000535193 | CD274 | chr9 | 5465606 | + | KDM4C | chr9 | 6792971 | + | 0.001786312 | 0.99821377 |
ENST00000381577 | ENST00000535193 | CD274 | chr9 | 5465606 | + | KDM4C | chr9 | 6792971 | + | 0.001817058 | 0.99818295 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >14432_14432_1_CD274-KDM4C_CD274_chr9_5465606_ENST00000381573_KDM4C_chr9_6792971_ENST00000535193_length(amino acids)=1001AA_BP=1 MSSWRVPRGPSSAQLPEAPHQPRFCPPAGHSRKMRIFAVFIFMTYWHLLNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSD HQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRL RKDTALTIMEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSG LFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIEG VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKI TQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDIYTIDHTKPTPAS TPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAEVPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQ NLSDHIKLSGNSCLSTSVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSVAESNGVLTEGEESDV ESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLSRPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQ TKSPNFAAEQEYNATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYSEENIEYSPPNAFLEEDGT SLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIP -------------------------------------------------------------- >14432_14432_2_CD274-KDM4C_CD274_chr9_5465606_ENST00000381577_KDM4C_chr9_6792971_ENST00000535193_length(amino acids)=1082AA_BP=0 MRIFAVFIFMTYWHLLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD QLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRLRKDTALTIM EVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQK KAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIEGVNTPYLYFG MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMI TFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDIYTIDHTKPTPASTPEVKAWLQ RRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAEVPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQNLSDHIKLS GNSCLSTSVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSVAESNGVLTEGEESDVESHGNGLEP GEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLSRPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAE QEYNATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYSEENIEYSPPNAFLEEDGTSLLISCAKC CVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLGRL -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr9:5465606/chr9:6792971) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
CD274 | KDM4C |
FUNCTION: Plays a critical role in induction and maintenance of immune tolerance to self (PubMed:11015443, PubMed:28813417, PubMed:28813410). As a ligand for the inhibitory receptor PDCD1/PD-1, modulates the activation threshold of T-cells and limits T-cell effector response (PubMed:11015443, PubMed:28813417, PubMed:28813410). Through a yet unknown activating receptor, may costimulate T-cell subsets that predominantly produce interleukin-10 (IL10) (PubMed:10581077). {ECO:0000269|PubMed:10581077, ECO:0000269|PubMed:11015443, ECO:0000269|PubMed:28813410, ECO:0000269|PubMed:28813417}.; FUNCTION: The PDCD1-mediated inhibitory pathway is exploited by tumors to attenuate anti-tumor immunity and escape destruction by the immune system, thereby facilitating tumor survival (PubMed:28813417, PubMed:28813410). The interaction with PDCD1/PD-1 inhibits cytotoxic T lymphocytes (CTLs) effector function (By similarity). The blockage of the PDCD1-mediated pathway results in the reversal of the exhausted T-cell phenotype and the normalization of the anti-tumor response, providing a rationale for cancer immunotherapy (By similarity). {ECO:0000250|UniProtKB:Q9EP73, ECO:0000269|PubMed:28813410, ECO:0000269|PubMed:28813417}. | FUNCTION: Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinate. {ECO:0000269|PubMed:16603238, ECO:0000269|PubMed:28262558}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381573 | + | 4 | 6 | 19_127 | 149.33333333333334 | 177.0 | Domain | Note=Ig-like V-type |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381577 | + | 5 | 7 | 133_225 | 263.3333333333333 | 291.0 | Domain | Note=Ig-like C2-type |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381577 | + | 5 | 7 | 19_127 | 263.3333333333333 | 291.0 | Domain | Note=Ig-like V-type |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381577 | + | 5 | 7 | 19_238 | 263.3333333333333 | 291.0 | Topological domain | Extracellular |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381577 | + | 5 | 7 | 239_259 | 263.3333333333333 | 291.0 | Transmembrane | Helical |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381306 | 0 | 21 | 144_310 | 0 | 1048.0 | Domain | JmjC | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381306 | 0 | 21 | 16_58 | 0 | 1048.0 | Domain | JmjN | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381306 | 0 | 21 | 877_934 | 0 | 1048.0 | Domain | Note=Tudor 1 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381306 | 0 | 21 | 935_991 | 0 | 1048.0 | Domain | Note=Tudor 2 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381309 | 0 | 22 | 144_310 | 0 | 1057.0 | Domain | JmjC | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381309 | 0 | 22 | 16_58 | 0 | 1057.0 | Domain | JmjN | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381309 | 0 | 22 | 877_934 | 0 | 1057.0 | Domain | Note=Tudor 1 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381309 | 0 | 22 | 935_991 | 0 | 1057.0 | Domain | Note=Tudor 2 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000535193 | 0 | 18 | 144_310 | 16.333333333333332 | 836.0 | Domain | JmjC | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000535193 | 0 | 18 | 16_58 | 16.333333333333332 | 836.0 | Domain | JmjN | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000535193 | 0 | 18 | 877_934 | 16.333333333333332 | 836.0 | Domain | Note=Tudor 1 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000535193 | 0 | 18 | 935_991 | 16.333333333333332 | 836.0 | Domain | Note=Tudor 2 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000543771 | 0 | 18 | 144_310 | 0 | 814.0 | Domain | JmjC | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000543771 | 0 | 18 | 16_58 | 0 | 814.0 | Domain | JmjN | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000543771 | 0 | 18 | 877_934 | 0 | 814.0 | Domain | Note=Tudor 1 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000543771 | 0 | 18 | 935_991 | 0 | 814.0 | Domain | Note=Tudor 2 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381306 | 0 | 21 | 689_747 | 0 | 1048.0 | Zinc finger | Note=PHD-type 1 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381306 | 0 | 21 | 752_785 | 0 | 1048.0 | Zinc finger | C2HC pre-PHD-type | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381306 | 0 | 21 | 808_865 | 0 | 1048.0 | Zinc finger | PHD-type 2 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381309 | 0 | 22 | 689_747 | 0 | 1057.0 | Zinc finger | Note=PHD-type 1 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381309 | 0 | 22 | 752_785 | 0 | 1057.0 | Zinc finger | C2HC pre-PHD-type | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000381309 | 0 | 22 | 808_865 | 0 | 1057.0 | Zinc finger | PHD-type 2 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000535193 | 0 | 18 | 689_747 | 16.333333333333332 | 836.0 | Zinc finger | Note=PHD-type 1 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000535193 | 0 | 18 | 752_785 | 16.333333333333332 | 836.0 | Zinc finger | C2HC pre-PHD-type | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000535193 | 0 | 18 | 808_865 | 16.333333333333332 | 836.0 | Zinc finger | PHD-type 2 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000543771 | 0 | 18 | 689_747 | 0 | 814.0 | Zinc finger | Note=PHD-type 1 | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000543771 | 0 | 18 | 752_785 | 0 | 814.0 | Zinc finger | C2HC pre-PHD-type | |
Tgene | KDM4C | chr9:5465606 | chr9:6792971 | ENST00000543771 | 0 | 18 | 808_865 | 0 | 814.0 | Zinc finger | PHD-type 2 |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381573 | + | 4 | 6 | 133_225 | 149.33333333333334 | 177.0 | Domain | Note=Ig-like C2-type |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381573 | + | 4 | 6 | 19_238 | 149.33333333333334 | 177.0 | Topological domain | Extracellular |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381573 | + | 4 | 6 | 260_290 | 149.33333333333334 | 177.0 | Topological domain | Cytoplasmic |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381577 | + | 5 | 7 | 260_290 | 263.3333333333333 | 291.0 | Topological domain | Cytoplasmic |
Hgene | CD274 | chr9:5465606 | chr9:6792971 | ENST00000381573 | + | 4 | 6 | 239_259 | 149.33333333333334 | 177.0 | Transmembrane | Helical |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
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Gene | STRING network |
CD274 | |
KDM4C |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to CD274-KDM4C |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to CD274-KDM4C |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |