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Center for Computational Systems Medicine level2
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein Structure

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pLDDT scores

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Ramachandran Plot of Fusion Protein Structure

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:DIP2B-SPATS2

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: DIP2B-SPATS2
FusionPDB ID: 22851
FusionGDB2.0 ID: 22851
HgeneTgene
Gene symbol

DIP2B

SPATS2

Gene ID

57609

65244

Gene namedisco interacting protein 2 homolog Bspermatogenesis associated serine rich 2
Synonyms-Nbla00526|P59SCR|SCR59|SPATA10
Cytomap

12q13.12

12q13.12

Type of geneprotein-codingprotein-coding
Descriptiondisco-interacting protein 2 homolog BDIP2 disco-interacting protein 2 homolog Bspermatogenesis-associated serine-rich protein 2putative protein product of Nbla00526serine-rich spermatocytes and round spermatid 59 kDa proteinserine-rich spermatocytes and round spermatid protein
Modification date2020031320200315
UniProtAcc

Q9P265

SPATS2L

Ensembl transtripts involved in fusion geneENST idsENST00000301180, ENST00000547865, 
ENST00000552557, ENST00000321898, 
ENST00000553127, ENST00000552918, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score19 X 15 X 11=313512 X 14 X 7=1176
# samples 2415
** MAII scorelog2(24/3135*10)=-3.70735913208088
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(15/1176*10)=-2.97085365434048
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: DIP2B [Title/Abstract] AND SPATS2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)DIP2B(51108379)-SPATS2(49919727), # samples:5
Anticipated loss of major functional domain due to fusion event.DIP2B-SPATS2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
DIP2B-SPATS2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
DIP2B-SPATS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
DIP2B-SPATS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
DIP2B-SPATS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
DIP2B-SPATS2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across DIP2B (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SPATS2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BLCATCGA-BL-A0C8-01ADIP2Bchr12

51108379

-SPATS2chr12

49919727

+
ChimerDB4BLCATCGA-BL-A0C8-01ADIP2Bchr12

51108379

+SPATS2chr12

49919727

+
ChimerDB4BLCATCGA-BL-A0C8-01ADIP2Bchr12

51108379

+SPATS2chr12

49919861

+
ChimerDB4BLCATCGA-BL-A0C8-01BDIP2Bchr12

51108379

+SPATS2chr12

49919727

+
ChimerDB4BLCATCGA-BL-A0C8DIP2Bchr12

51108379

+SPATS2chr12

49919726

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000301180DIP2Bchr1251108379+ENST00000552918SPATS2chr1249919727+41682885342922962
ENST00000301180DIP2Bchr1251108379+ENST00000552918SPATS2chr1249919726+41682885342922962
ENST00000301180DIP2Bchr1251108379+ENST00000552918SPATS2chr1249919861+40332885342925963

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000301180ENST00000552918DIP2Bchr1251108379+SPATS2chr1249919727+0.0011040040.998896
ENST00000301180ENST00000552918DIP2Bchr1251108379+SPATS2chr1249919726+0.0011040040.998896
ENST00000301180ENST00000552918DIP2Bchr1251108379+SPATS2chr1249919861+0.001083440.9989166

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>22851_22851_1_DIP2B-SPATS2_DIP2B_chr12_51108379_ENST00000301180_SPATS2_chr12_49919726_ENST00000552918_length(amino acids)=962AA_BP=
MAERGLEPSPAAVAALPPEVRAQLAELELELSEGDITQKGYEKKRSKLLSPYSPQTQETDSAVQKELRNQTPAPSAAQTSAPSKYHRTRS
GGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPPDTSSASEDEGSLRRQAALSAALQQSLQNAESWINRSIQ
GSSTSSSASSTLSHGEVKGTSGSLADVFANTRIENFSAPPDVTTTTSSSSSSSSIRPANIDLPPSGIVKGMHKGSNRSSLMDTADGVPVS
SRVSTKIQQLLNTLKRPKRPPLKEFFVDDSEEIVEVPQPDPNQPKPEGRQMTPVKGEPLGVICNWPPALESALQRWGTTQAKCSCLTALD
MTGKPVYTLTYGKLWSRSLKLAYTLLNKLGTKNEPVLKPGDRVALVYPNNDPVMFMVAFYGCLLAEVIPVPIEVPLTRKDAGGQQIGFLL
GSCGIALALTSEVCLKGLPKTQNGEIVQFKGWPRLKWVVTDSKYLSKPPKDWQPHISPAGTEPAYIEYKTSKEGSVMGVTVSRLAMLSHC
QALSQACNYSEGETIVNVLDFKKDAGLWHGMFANVMNKMHTISVPYSVMKTCPLSWVQRVHAHKAKVALVKCRDLHWAMMAHRDQRDVSL
SSLRMLIVTDGANPWSVSSCDAFLSLFQSHGLKPEAICPCATSAEAMTVAIRRPGVPGAPLPGRAILSMNGLSYGVIRVNTEDKNSALTV
QDVGHVMPGGMMCIVKPDGPPQLCKTDEIGEICVSSRTGGMMYFGLAGVTKNTFEVIPVNSAGSPVGDVPFIRSGLLGFVGPGSLVFVVG
KMDGLLMVSGRRHNADDIVATGLAVESIKTVYRGRIAVFSVSVFYDERIVVVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVP

--------------------------------------------------------------

>22851_22851_2_DIP2B-SPATS2_DIP2B_chr12_51108379_ENST00000301180_SPATS2_chr12_49919727_ENST00000552918_length(amino acids)=962AA_BP=
MAERGLEPSPAAVAALPPEVRAQLAELELELSEGDITQKGYEKKRSKLLSPYSPQTQETDSAVQKELRNQTPAPSAAQTSAPSKYHRTRS
GGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPPDTSSASEDEGSLRRQAALSAALQQSLQNAESWINRSIQ
GSSTSSSASSTLSHGEVKGTSGSLADVFANTRIENFSAPPDVTTTTSSSSSSSSIRPANIDLPPSGIVKGMHKGSNRSSLMDTADGVPVS
SRVSTKIQQLLNTLKRPKRPPLKEFFVDDSEEIVEVPQPDPNQPKPEGRQMTPVKGEPLGVICNWPPALESALQRWGTTQAKCSCLTALD
MTGKPVYTLTYGKLWSRSLKLAYTLLNKLGTKNEPVLKPGDRVALVYPNNDPVMFMVAFYGCLLAEVIPVPIEVPLTRKDAGGQQIGFLL
GSCGIALALTSEVCLKGLPKTQNGEIVQFKGWPRLKWVVTDSKYLSKPPKDWQPHISPAGTEPAYIEYKTSKEGSVMGVTVSRLAMLSHC
QALSQACNYSEGETIVNVLDFKKDAGLWHGMFANVMNKMHTISVPYSVMKTCPLSWVQRVHAHKAKVALVKCRDLHWAMMAHRDQRDVSL
SSLRMLIVTDGANPWSVSSCDAFLSLFQSHGLKPEAICPCATSAEAMTVAIRRPGVPGAPLPGRAILSMNGLSYGVIRVNTEDKNSALTV
QDVGHVMPGGMMCIVKPDGPPQLCKTDEIGEICVSSRTGGMMYFGLAGVTKNTFEVIPVNSAGSPVGDVPFIRSGLLGFVGPGSLVFVVG
KMDGLLMVSGRRHNADDIVATGLAVESIKTVYRGRIAVFSVSVFYDERIVVVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVP

--------------------------------------------------------------

>22851_22851_3_DIP2B-SPATS2_DIP2B_chr12_51108379_ENST00000301180_SPATS2_chr12_49919861_ENST00000552918_length(amino acids)=963AA_BP=
MAERGLEPSPAAVAALPPEVRAQLAELELELSEGDITQKGYEKKRSKLLSPYSPQTQETDSAVQKELRNQTPAPSAAQTSAPSKYHRTRS
GGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPPDTSSASEDEGSLRRQAALSAALQQSLQNAESWINRSIQ
GSSTSSSASSTLSHGEVKGTSGSLADVFANTRIENFSAPPDVTTTTSSSSSSSSIRPANIDLPPSGIVKGMHKGSNRSSLMDTADGVPVS
SRVSTKIQQLLNTLKRPKRPPLKEFFVDDSEEIVEVPQPDPNQPKPEGRQMTPVKGEPLGVICNWPPALESALQRWGTTQAKCSCLTALD
MTGKPVYTLTYGKLWSRSLKLAYTLLNKLGTKNEPVLKPGDRVALVYPNNDPVMFMVAFYGCLLAEVIPVPIEVPLTRKDAGGQQIGFLL
GSCGIALALTSEVCLKGLPKTQNGEIVQFKGWPRLKWVVTDSKYLSKPPKDWQPHISPAGTEPAYIEYKTSKEGSVMGVTVSRLAMLSHC
QALSQACNYSEGETIVNVLDFKKDAGLWHGMFANVMNKMHTISVPYSVMKTCPLSWVQRVHAHKAKVALVKCRDLHWAMMAHRDQRDVSL
SSLRMLIVTDGANPWSVSSCDAFLSLFQSHGLKPEAICPCATSAEAMTVAIRRPGVPGAPLPGRAILSMNGLSYGVIRVNTEDKNSALTV
QDVGHVMPGGMMCIVKPDGPPQLCKTDEIGEICVSSRTGGMMYFGLAGVTKNTFEVIPVNSAGSPVGDVPFIRSGLLGFVGPGSLVFVVG
KMDGLLMVSGRRHNADDIVATGLAVESIKTVYRGRIAVFSVSVFYDERIVVVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVP

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:51108379/chr12:49919727)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
DIP2B

Q9P265

SPATS2

SPATS2L

FUNCTION: Negatively regulates axonal outgrowth and is essential for normal synaptic transmission. Not required for regulation of axon polarity. Promotes acetylation of alpha-tubulin. {ECO:0000250|UniProtKB:Q3UH60}.558

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneDIP2Bchr12:51108379chr12:49919726ENST00000301180+2338145_234950.33333333333341577.0Compositional biasNote=Ser-rich
HgeneDIP2Bchr12:51108379chr12:49919727ENST00000301180+2338145_234950.33333333333341577.0Compositional biasNote=Ser-rich
HgeneDIP2Bchr12:51108379chr12:49919861ENST00000301180+2338145_234950.33333333333341577.0Compositional biasNote=Ser-rich
HgeneDIP2Bchr12:51108379chr12:49919726ENST00000301180+233812_131950.33333333333341577.0DomainDMAP1-binding
HgeneDIP2Bchr12:51108379chr12:49919727ENST00000301180+233812_131950.33333333333341577.0DomainDMAP1-binding
HgeneDIP2Bchr12:51108379chr12:49919861ENST00000301180+233812_131950.33333333333341577.0DomainDMAP1-binding
TgeneSPATS2chr12:51108379chr12:49919861ENST00000321898013364_4140546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919861ENST0000032189801386_970546.0Compositional biasNote=Poly-Lys
TgeneSPATS2chr12:51108379chr12:49919861ENST00000552918014364_4140546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919861ENST0000055291801486_970546.0Compositional biasNote=Poly-Lys
TgeneSPATS2chr12:51108379chr12:49919861ENST00000553127015364_4140546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919861ENST0000055312701586_970546.0Compositional biasNote=Poly-Lys

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneDIP2Bchr12:51108379chr12:49919726ENST00000301180+23381118_1121950.33333333333341577.0Compositional biasNote=Poly-Ala
HgeneDIP2Bchr12:51108379chr12:49919726ENST00000301180+23381503_1506950.33333333333341577.0Compositional biasNote=Poly-Val
HgeneDIP2Bchr12:51108379chr12:49919726ENST00000301180+23381534_1540950.33333333333341577.0Compositional biasNote=Poly-Val
HgeneDIP2Bchr12:51108379chr12:49919727ENST00000301180+23381118_1121950.33333333333341577.0Compositional biasNote=Poly-Ala
HgeneDIP2Bchr12:51108379chr12:49919727ENST00000301180+23381503_1506950.33333333333341577.0Compositional biasNote=Poly-Val
HgeneDIP2Bchr12:51108379chr12:49919727ENST00000301180+23381534_1540950.33333333333341577.0Compositional biasNote=Poly-Val
HgeneDIP2Bchr12:51108379chr12:49919861ENST00000301180+23381118_1121950.33333333333341577.0Compositional biasNote=Poly-Ala
HgeneDIP2Bchr12:51108379chr12:49919861ENST00000301180+23381503_1506950.33333333333341577.0Compositional biasNote=Poly-Val
HgeneDIP2Bchr12:51108379chr12:49919861ENST00000301180+23381534_1540950.33333333333341577.0Compositional biasNote=Poly-Val
TgeneSPATS2chr12:51108379chr12:49919726ENST000003218981113364_414442.0546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919726ENST00000321898111386_97442.0546.0Compositional biasNote=Poly-Lys
TgeneSPATS2chr12:51108379chr12:49919726ENST000005529181214364_414442.0546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919726ENST00000552918121486_97442.0546.0Compositional biasNote=Poly-Lys
TgeneSPATS2chr12:51108379chr12:49919726ENST000005531271315364_414442.0546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919726ENST00000553127131586_97442.0546.0Compositional biasNote=Poly-Lys
TgeneSPATS2chr12:51108379chr12:49919727ENST000003218981113364_414442.0546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919727ENST00000321898111386_97442.0546.0Compositional biasNote=Poly-Lys
TgeneSPATS2chr12:51108379chr12:49919727ENST000005529181214364_414442.0546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919727ENST00000552918121486_97442.0546.0Compositional biasNote=Poly-Lys
TgeneSPATS2chr12:51108379chr12:49919727ENST000005531271315364_414442.0546.0Compositional biasNote=Ser-rich
TgeneSPATS2chr12:51108379chr12:49919727ENST00000553127131586_97442.0546.0Compositional biasNote=Poly-Lys


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Fusion Protein Structures

check button PDB and CIF files of the predicted fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Fusion protein PDB link (fusion AA seq ID in FusionPDB)HgeneHchrHbpHstrandTgeneTchrTbpTstrandAA seqLen(AA seq)


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pLDDT score distribution

check button pLDDT score distribution of the predicted wild-type structures of two partner proteins from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
DIP2B_pLDDT.png
all structure
all structure
SPATS2_pLDDT.png
all structure
all structure

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.


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Ramachandran Plot of Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.
Fusion AA seq ID in FusionPDB and their Ramachandran plots

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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
DIP2B
SPATS2


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to DIP2B-SPATS2


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to DIP2B-SPATS2


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource