| UTHEALTH HOME ABOUT SBMI A-Z WEBMAIL INSIDE THE UNIVERSITY |
|
|||||||
|
Fusion Protein:FAT1-ELF2 |
Fusion Protein Summary |
 Fusion gene summary |
| Fusion partner gene information | Fusion gene name: FAT1-ELF2 | FusionPDB ID: 29454 | FusionGDB2.0 ID: 29454 | Hgene | Tgene | Gene symbol | FAT1 | ELF2 | Gene ID | 2195 | 1998 |
| Gene name | FAT atypical cadherin 1 | E74 like ETS transcription factor 2 | |
| Synonyms | CDHF7|CDHR8|FAT|ME5|hFat1 | EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 | |
| Cytomap | 4q35.2 | 4q31.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protocadherin Fat 1FAT tumor suppressor 1cadherin ME5cadherin family member 7cadherin-related family member 8cadherin-related tumor suppressor homologprotein fat homolog | ETS-related transcription factor Elf-2E74-like factor 2 (ets domain transcription factor)ets family transcription factor ELF2Cnew Ets-related factor | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | Q14517 | Q15723 | |
| Ensembl transtripts involved in fusion gene | ENST ids | ENST00000441802, ENST00000512347, | ENST00000515489, ENST00000265495, ENST00000358635, ENST00000379549, ENST00000379550, ENST00000394235, ENST00000510408, |
| Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 16 X 17 X 8=2176 | 9 X 8 X 4=288 |
| # samples | 20 | 9 | |
| ** MAII score | log2(20/2176*10)=-3.44360665147561 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/288*10)=-1.67807190511264 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context (manual curation of fusion genes in FusionPDB) | PubMed: FAT1 [Title/Abstract] AND ELF2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | FAT1(187627716)-ELF2(139994721), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | FAT1-ELF2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. FAT1-ELF2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. FAT1-ELF2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. FAT1-ELF2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | ELF2 | GO:0006357 | regulation of transcription by RNA polymerase II | 8756667 |
| Tgene | ELF2 | GO:0045893 | positive regulation of transcription, DNA-templated | 8756667 |
| Fusion gene breakpoints across FAT1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
 |
| Fusion gene breakpoints across ELF2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
 |
Top |
Fusion Gene Sample Information |
| Fusion gene information from FusionGDB2.0. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-D7-A4YY | FAT1 | chr4 | 187627716 | - | ELF2 | chr4 | 139994721 | - |
Top |
Fusion ORF Analysis |
| Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000441802 | FAT1 | chr4 | 187627716 | - | ENST00000394235 | ELF2 | chr4 | 139994721 | - | 6746 | 3475 | 210 | 4982 | 1590 |
| ENST00000441802 | FAT1 | chr4 | 187627716 | - | ENST00000379549 | ELF2 | chr4 | 139994721 | - | 6198 | 3475 | 210 | 4931 | 1573 |
| ENST00000441802 | FAT1 | chr4 | 187627716 | - | ENST00000379550 | ELF2 | chr4 | 139994721 | - | 6285 | 3475 | 210 | 5018 | 1602 |
| ENST00000441802 | FAT1 | chr4 | 187627716 | - | ENST00000265495 | ELF2 | chr4 | 139994721 | - | 6249 | 3475 | 210 | 4982 | 1590 |
| ENST00000441802 | FAT1 | chr4 | 187627716 | - | ENST00000358635 | ELF2 | chr4 | 139994721 | - | 6147 | 3475 | 210 | 5018 | 1602 |
| ENST00000441802 | FAT1 | chr4 | 187627716 | - | ENST00000510408 | ELF2 | chr4 | 139994721 | - | 5247 | 3475 | 210 | 4982 | 1590 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000441802 | ENST00000394235 | FAT1 | chr4 | 187627716 | - | ELF2 | chr4 | 139994721 | - | 0.000135698 | 0.99986434 |
| ENST00000441802 | ENST00000379549 | FAT1 | chr4 | 187627716 | - | ELF2 | chr4 | 139994721 | - | 0.000265186 | 0.9997348 |
| ENST00000441802 | ENST00000379550 | FAT1 | chr4 | 187627716 | - | ELF2 | chr4 | 139994721 | - | 0.000248018 | 0.999752 |
| ENST00000441802 | ENST00000265495 | FAT1 | chr4 | 187627716 | - | ELF2 | chr4 | 139994721 | - | 0.000183797 | 0.99981624 |
| ENST00000441802 | ENST00000358635 | FAT1 | chr4 | 187627716 | - | ELF2 | chr4 | 139994721 | - | 0.00028155 | 0.9997185 |
| ENST00000441802 | ENST00000510408 | FAT1 | chr4 | 187627716 | - | ELF2 | chr4 | 139994721 | - | 0.000329407 | 0.9996706 |
Top |
Fusion Amino Acid Sequences |
| For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >29454_29454_1_FAT1-ELF2_FAT1_chr4_187627716_ENST00000441802_ELF2_chr4_139994721_ENST00000265495_length(amino acids)=1590AA_BP=1088 MGRHLALLLLLLLLFQHFGDSDGSQRLEQTPLQFTHLEYNVTVQENSAAKTYVGHPVKMGVYITHPAWEVRYKIVSGDSENLFKAEEYIL GDFCFLRIRTKGGNTAILNREVKDHYTLIVKALEKNTNVEARTKVRVQVLDTNDLRPLFSPTSYSVSLPENTAIRTSIARVSATDADIGT NGEFYYSFKDRTDMFAIHPTSGVIVLTGRLDYLETKLYEMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAPVITAVTLSPSELDRD PAYAIVTVDDCDQGANGDIASLSIVAGDLLQQFRTVRSFPGSKEYKVKAIGGIDWDSHPFGYNLTLQAKDKGTPPQFSSVKVIHVTSPQF KAGPVKFEKDVYRAEISEFAPPNTPVVMVKAIPAYSHLRYVFKSTPGKAKFSLNYNTGLISILEPVKRQQAAHFELEVTTSDRKASTKVL VKVLGANSNPPEFTQTAYKAAFDENVPIGTTVMSLSAVDPDEGENGYVTYSIANLNHVPFAIDHFTGAVSTSENLDYELMPRVYTLRIRA SDWGLPYRREVEVLATITLNNLNDNTPLFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVQYQIEAGNELDFFSLNPNSGVLSLKRSL MDGLGAKVSFHSLRITATDGENFATPLYINITVAASHKLVNLQCEETGVAKMLAEKLLQANKLHNQGEVEDIFFDSHSVNAHIPQFRSTL PTGIQVKENQPVGSSVIFMNSTDLDTGFNGKLVYAVSGGNEDSCFMIDMETGMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHV VVVDANDNPPEFLQESYFVEVSEDKEVHSEIIQVEATDKDLGPNGHVTYSIVTDTDTFSIDSVTGVVNIARPLDRELQHEHSLKIEARDQ AREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRVKVREDLPEGTVIMWLEAHDPDLGQSGQVRYSLLDHGEGNFDVDKLSGAVRIVQQLD FEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDAPVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVG VFKIGEETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAMRPDVITETVVEVSTEESEPMDTSPIPTSPDSHEPMKK KKVGRKPKTQQSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYET MGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCNEDLAGTTDEKSLERVSLSAESLLKAASSVRSGKNSSPINCSRAEK GVARVVNITSPGHDASSRSPTTTASVSATAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGAPLITSTSPTTATSPKVVIQTIPTVMP ASTENGDKITMQPAKIITIPATQLAQCQLQTKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSMPTQQASGQTPPRVISAVIKGP -------------------------------------------------------------- >29454_29454_2_FAT1-ELF2_FAT1_chr4_187627716_ENST00000441802_ELF2_chr4_139994721_ENST00000358635_length(amino acids)=1602AA_BP=1088 MGRHLALLLLLLLLFQHFGDSDGSQRLEQTPLQFTHLEYNVTVQENSAAKTYVGHPVKMGVYITHPAWEVRYKIVSGDSENLFKAEEYIL GDFCFLRIRTKGGNTAILNREVKDHYTLIVKALEKNTNVEARTKVRVQVLDTNDLRPLFSPTSYSVSLPENTAIRTSIARVSATDADIGT NGEFYYSFKDRTDMFAIHPTSGVIVLTGRLDYLETKLYEMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAPVITAVTLSPSELDRD PAYAIVTVDDCDQGANGDIASLSIVAGDLLQQFRTVRSFPGSKEYKVKAIGGIDWDSHPFGYNLTLQAKDKGTPPQFSSVKVIHVTSPQF KAGPVKFEKDVYRAEISEFAPPNTPVVMVKAIPAYSHLRYVFKSTPGKAKFSLNYNTGLISILEPVKRQQAAHFELEVTTSDRKASTKVL VKVLGANSNPPEFTQTAYKAAFDENVPIGTTVMSLSAVDPDEGENGYVTYSIANLNHVPFAIDHFTGAVSTSENLDYELMPRVYTLRIRA SDWGLPYRREVEVLATITLNNLNDNTPLFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVQYQIEAGNELDFFSLNPNSGVLSLKRSL MDGLGAKVSFHSLRITATDGENFATPLYINITVAASHKLVNLQCEETGVAKMLAEKLLQANKLHNQGEVEDIFFDSHSVNAHIPQFRSTL PTGIQVKENQPVGSSVIFMNSTDLDTGFNGKLVYAVSGGNEDSCFMIDMETGMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHV VVVDANDNPPEFLQESYFVEVSEDKEVHSEIIQVEATDKDLGPNGHVTYSIVTDTDTFSIDSVTGVVNIARPLDRELQHEHSLKIEARDQ AREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRVKVREDLPEGTVIMWLEAHDPDLGQSGQVRYSLLDHGEGNFDVDKLSGAVRIVQQLD FEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDAPVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVG VFKIGEETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPPCVSTPEFIHAAMRPDVITETVVEVSTEESEPMDTSPI PTSPDSHEPMKKKKVGRKPKTQQSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWG KHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCNEDLAGTTDEKSLERVSLSAESLLKAASSVRSGK NSSPINCSRAEKGVARVVNITSPGHDASSRSPTTTASVSATAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGAPLITSTSPTTATSP KVVIQTIPTVMPASTENGDKITMQPAKIITIPATQLAQCQLQTKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSMPTQQASGQT -------------------------------------------------------------- >29454_29454_3_FAT1-ELF2_FAT1_chr4_187627716_ENST00000441802_ELF2_chr4_139994721_ENST00000379549_length(amino acids)=1573AA_BP=1088 MGRHLALLLLLLLLFQHFGDSDGSQRLEQTPLQFTHLEYNVTVQENSAAKTYVGHPVKMGVYITHPAWEVRYKIVSGDSENLFKAEEYIL GDFCFLRIRTKGGNTAILNREVKDHYTLIVKALEKNTNVEARTKVRVQVLDTNDLRPLFSPTSYSVSLPENTAIRTSIARVSATDADIGT NGEFYYSFKDRTDMFAIHPTSGVIVLTGRLDYLETKLYEMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAPVITAVTLSPSELDRD PAYAIVTVDDCDQGANGDIASLSIVAGDLLQQFRTVRSFPGSKEYKVKAIGGIDWDSHPFGYNLTLQAKDKGTPPQFSSVKVIHVTSPQF KAGPVKFEKDVYRAEISEFAPPNTPVVMVKAIPAYSHLRYVFKSTPGKAKFSLNYNTGLISILEPVKRQQAAHFELEVTTSDRKASTKVL VKVLGANSNPPEFTQTAYKAAFDENVPIGTTVMSLSAVDPDEGENGYVTYSIANLNHVPFAIDHFTGAVSTSENLDYELMPRVYTLRIRA SDWGLPYRREVEVLATITLNNLNDNTPLFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVQYQIEAGNELDFFSLNPNSGVLSLKRSL MDGLGAKVSFHSLRITATDGENFATPLYINITVAASHKLVNLQCEETGVAKMLAEKLLQANKLHNQGEVEDIFFDSHSVNAHIPQFRSTL PTGIQVKENQPVGSSVIFMNSTDLDTGFNGKLVYAVSGGNEDSCFMIDMETGMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHV VVVDANDNPPEFLQESYFVEVSEDKEVHSEIIQVEATDKDLGPNGHVTYSIVTDTDTFSIDSVTGVVNIARPLDRELQHEHSLKIEARDQ AREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRVKVREDLPEGTVIMWLEAHDPDLGQSGQVRYSLLDHGEGNFDVDKLSGAVRIVQQLD FEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDAPVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVG VFKIGEETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPPCVSTPEFIHAAMRPDVITETVVEVSTEESEPMDTSPI PTSPDSHEPMKKKKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKV EGQRLVYQFKDMPKNIVVIDDDKSETCNEDLAGTTDEKSLERVSLSAESLLKAASSVRSGKNSSPINCSRAEKGVARVVNITSPGHDASS RSPTTTASVSATAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGAPLITSTSPTTATSPKVVIQTIPTVMPASTENGDKITMQPAKII TIPATQLAQCQLQTKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSMPTQQASGQTPPRVISAVIKGPEVKSEAVAKKQEHDVKT -------------------------------------------------------------- >29454_29454_4_FAT1-ELF2_FAT1_chr4_187627716_ENST00000441802_ELF2_chr4_139994721_ENST00000379550_length(amino acids)=1602AA_BP=1088 MGRHLALLLLLLLLFQHFGDSDGSQRLEQTPLQFTHLEYNVTVQENSAAKTYVGHPVKMGVYITHPAWEVRYKIVSGDSENLFKAEEYIL GDFCFLRIRTKGGNTAILNREVKDHYTLIVKALEKNTNVEARTKVRVQVLDTNDLRPLFSPTSYSVSLPENTAIRTSIARVSATDADIGT NGEFYYSFKDRTDMFAIHPTSGVIVLTGRLDYLETKLYEMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAPVITAVTLSPSELDRD PAYAIVTVDDCDQGANGDIASLSIVAGDLLQQFRTVRSFPGSKEYKVKAIGGIDWDSHPFGYNLTLQAKDKGTPPQFSSVKVIHVTSPQF KAGPVKFEKDVYRAEISEFAPPNTPVVMVKAIPAYSHLRYVFKSTPGKAKFSLNYNTGLISILEPVKRQQAAHFELEVTTSDRKASTKVL VKVLGANSNPPEFTQTAYKAAFDENVPIGTTVMSLSAVDPDEGENGYVTYSIANLNHVPFAIDHFTGAVSTSENLDYELMPRVYTLRIRA SDWGLPYRREVEVLATITLNNLNDNTPLFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVQYQIEAGNELDFFSLNPNSGVLSLKRSL MDGLGAKVSFHSLRITATDGENFATPLYINITVAASHKLVNLQCEETGVAKMLAEKLLQANKLHNQGEVEDIFFDSHSVNAHIPQFRSTL PTGIQVKENQPVGSSVIFMNSTDLDTGFNGKLVYAVSGGNEDSCFMIDMETGMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHV VVVDANDNPPEFLQESYFVEVSEDKEVHSEIIQVEATDKDLGPNGHVTYSIVTDTDTFSIDSVTGVVNIARPLDRELQHEHSLKIEARDQ AREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRVKVREDLPEGTVIMWLEAHDPDLGQSGQVRYSLLDHGEGNFDVDKLSGAVRIVQQLD FEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDAPVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVG VFKIGEETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPPCVSTPEFIHAAMRPDVITETVVEVSTEESEPMDTSPI PTSPDSHEPMKKKKVGRKPKTQQSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWG KHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCNEDLAGTTDEKSLERVSLSAESLLKAASSVRSGK NSSPINCSRAEKGVARVVNITSPGHDASSRSPTTTASVSATAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGAPLITSTSPTTATSP KVVIQTIPTVMPASTENGDKITMQPAKIITIPATQLAQCQLQTKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSMPTQQASGQT -------------------------------------------------------------- >29454_29454_5_FAT1-ELF2_FAT1_chr4_187627716_ENST00000441802_ELF2_chr4_139994721_ENST00000394235_length(amino acids)=1590AA_BP=1088 MGRHLALLLLLLLLFQHFGDSDGSQRLEQTPLQFTHLEYNVTVQENSAAKTYVGHPVKMGVYITHPAWEVRYKIVSGDSENLFKAEEYIL GDFCFLRIRTKGGNTAILNREVKDHYTLIVKALEKNTNVEARTKVRVQVLDTNDLRPLFSPTSYSVSLPENTAIRTSIARVSATDADIGT NGEFYYSFKDRTDMFAIHPTSGVIVLTGRLDYLETKLYEMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAPVITAVTLSPSELDRD PAYAIVTVDDCDQGANGDIASLSIVAGDLLQQFRTVRSFPGSKEYKVKAIGGIDWDSHPFGYNLTLQAKDKGTPPQFSSVKVIHVTSPQF KAGPVKFEKDVYRAEISEFAPPNTPVVMVKAIPAYSHLRYVFKSTPGKAKFSLNYNTGLISILEPVKRQQAAHFELEVTTSDRKASTKVL VKVLGANSNPPEFTQTAYKAAFDENVPIGTTVMSLSAVDPDEGENGYVTYSIANLNHVPFAIDHFTGAVSTSENLDYELMPRVYTLRIRA SDWGLPYRREVEVLATITLNNLNDNTPLFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVQYQIEAGNELDFFSLNPNSGVLSLKRSL MDGLGAKVSFHSLRITATDGENFATPLYINITVAASHKLVNLQCEETGVAKMLAEKLLQANKLHNQGEVEDIFFDSHSVNAHIPQFRSTL PTGIQVKENQPVGSSVIFMNSTDLDTGFNGKLVYAVSGGNEDSCFMIDMETGMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHV VVVDANDNPPEFLQESYFVEVSEDKEVHSEIIQVEATDKDLGPNGHVTYSIVTDTDTFSIDSVTGVVNIARPLDRELQHEHSLKIEARDQ AREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRVKVREDLPEGTVIMWLEAHDPDLGQSGQVRYSLLDHGEGNFDVDKLSGAVRIVQQLD FEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDAPVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVG VFKIGEETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAMRPDVITETVVEVSTEESEPMDTSPIPTSPDSHEPMKK KKVGRKPKTQQSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYET MGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCNEDLAGTTDEKSLERVSLSAESLLKAASSVRSGKNSSPINCSRAEK GVARVVNITSPGHDASSRSPTTTASVSATAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGAPLITSTSPTTATSPKVVIQTIPTVMP ASTENGDKITMQPAKIITIPATQLAQCQLQTKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSMPTQQASGQTPPRVISAVIKGP -------------------------------------------------------------- >29454_29454_6_FAT1-ELF2_FAT1_chr4_187627716_ENST00000441802_ELF2_chr4_139994721_ENST00000510408_length(amino acids)=1590AA_BP=1088 MGRHLALLLLLLLLFQHFGDSDGSQRLEQTPLQFTHLEYNVTVQENSAAKTYVGHPVKMGVYITHPAWEVRYKIVSGDSENLFKAEEYIL GDFCFLRIRTKGGNTAILNREVKDHYTLIVKALEKNTNVEARTKVRVQVLDTNDLRPLFSPTSYSVSLPENTAIRTSIARVSATDADIGT NGEFYYSFKDRTDMFAIHPTSGVIVLTGRLDYLETKLYEMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAPVITAVTLSPSELDRD PAYAIVTVDDCDQGANGDIASLSIVAGDLLQQFRTVRSFPGSKEYKVKAIGGIDWDSHPFGYNLTLQAKDKGTPPQFSSVKVIHVTSPQF KAGPVKFEKDVYRAEISEFAPPNTPVVMVKAIPAYSHLRYVFKSTPGKAKFSLNYNTGLISILEPVKRQQAAHFELEVTTSDRKASTKVL VKVLGANSNPPEFTQTAYKAAFDENVPIGTTVMSLSAVDPDEGENGYVTYSIANLNHVPFAIDHFTGAVSTSENLDYELMPRVYTLRIRA SDWGLPYRREVEVLATITLNNLNDNTPLFEKINCEGTIPRDLGVGEQITTVSAIDADELQLVQYQIEAGNELDFFSLNPNSGVLSLKRSL MDGLGAKVSFHSLRITATDGENFATPLYINITVAASHKLVNLQCEETGVAKMLAEKLLQANKLHNQGEVEDIFFDSHSVNAHIPQFRSTL PTGIQVKENQPVGSSVIFMNSTDLDTGFNGKLVYAVSGGNEDSCFMIDMETGMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHV VVVDANDNPPEFLQESYFVEVSEDKEVHSEIIQVEATDKDLGPNGHVTYSIVTDTDTFSIDSVTGVVNIARPLDRELQHEHSLKIEARDQ AREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRVKVREDLPEGTVIMWLEAHDPDLGQSGQVRYSLLDHGEGNFDVDKLSGAVRIVQQLD FEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDAPVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVG VFKIGEETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAMRPDVITETVVEVSTEESEPMDTSPIPTSPDSHEPMKK KKVGRKPKTQQSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYET MGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCNEDLAGTTDEKSLERVSLSAESLLKAASSVRSGKNSSPINCSRAEK GVARVVNITSPGHDASSRSPTTTASVSATAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGAPLITSTSPTTATSPKVVIQTIPTVMP ASTENGDKITMQPAKIITIPATQLAQCQLQTKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSMPTQQASGQTPPRVISAVIKGP -------------------------------------------------------------- |
Top |
Fusion Protein Functional Features |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr4:187627716/chr4:139994721) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| FAT1 | ELF2 |
| FUNCTION: [Protocadherin Fat 1]: Plays an essential role for cellular polarization, directed cell migration and modulating cell-cell contact. {ECO:0000250}. | FUNCTION: Isoform 1 transcriptionally activates the LYN and BLK promoters and acts synergistically with RUNX1 to transactivate the BLK promoter.; FUNCTION: Isoform 2 may function in repression of RUNX1-mediated transactivation. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 150_257 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 2 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 35_149 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 1 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 368_463 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 3 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 464_569 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 4 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 570_673 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 5 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 718_822 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 6 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 823_927 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 7 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 928_1034 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 8 |
| Tgene | ELF2 | chr4:187627716 | chr4:139994721 | ENST00000265495 | 2 | 9 | 208_290 | 79.33333333333333 | 582.0 | DNA binding | ETS | |
| Tgene | ELF2 | chr4:187627716 | chr4:139994721 | ENST00000358635 | 0 | 7 | 208_290 | 19.333333333333332 | 534.0 | DNA binding | ETS | |
| Tgene | ELF2 | chr4:187627716 | chr4:139994721 | ENST00000379550 | 2 | 9 | 208_290 | 79.33333333333333 | 594.0 | DNA binding | ETS | |
| Tgene | ELF2 | chr4:187627716 | chr4:139994721 | ENST00000394235 | 3 | 10 | 208_290 | 79.33333333333333 | 582.0 | DNA binding | ETS | |
| Tgene | ELF2 | chr4:187627716 | chr4:139994721 | ENST00000510408 | 0 | 7 | 208_290 | 19.333333333333332 | 522.0 | DNA binding | ETS |
| - Not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1035_1139 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 9 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1140_1245 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 10 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1246_1357 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 11 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1359_1456 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 12 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1457_1562 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 13 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1563_1667 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 14 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1668_1765 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 15 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1766_1879 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 16 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1880_1979 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 17 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 1980_2081 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 18 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2082_2182 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 19 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2183_2283 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 20 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2284_2390 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 21 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2391_2492 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 22 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2493_2596 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 23 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2597_2703 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 24 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2704_2809 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 25 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2810_2918 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 26 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 2919_3023 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 27 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 3024_3125 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 28 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 3126_3230 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 29 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 3231_3335 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 30 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 3336_3440 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 31 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 3441_3545 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 32 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 3546_3647 | 1088.3333333333333 | 4589.0 | Domain | Cadherin 33 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 3790_3827 | 1088.3333333333333 | 4589.0 | Domain | EGF-like 1 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 3829_4009 | 1088.3333333333333 | 4589.0 | Domain | Laminin G-like |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 4013_4050 | 1088.3333333333333 | 4589.0 | Domain | EGF-like 2 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 4052_4088 | 1088.3333333333333 | 4589.0 | Domain | EGF-like 3 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 4089_4125 | 1088.3333333333333 | 4589.0 | Domain | EGF-like 4 |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 4127_4163 | 1088.3333333333333 | 4589.0 | Domain | EGF-like 5%3B calcium-binding |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 4204_4214 | 1088.3333333333333 | 4589.0 | Motif | Nuclear localization signal |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 4378_4382 | 1088.3333333333333 | 4589.0 | Motif | PTB-like motif |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 22_4181 | 1088.3333333333333 | 4589.0 | Topological domain | Extracellular |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 4203_4588 | 1088.3333333333333 | 4589.0 | Topological domain | Cytoplasmic |
| Hgene | FAT1 | chr4:187627716 | chr4:139994721 | ENST00000441802 | - | 2 | 27 | 4182_4202 | 1088.3333333333333 | 4589.0 | Transmembrane | Helical |
Top |
Fusion Protein-Protein Interaction |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
| Gene | PPI interactors |
| Protein-protein interactors based on sequence similarity (STRING) |
| Gene | STRING network |
| FAT1 | |
| ELF2 |
| - Retained interactions in fusion protein (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost interactions due to fusion (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs to FAT1-ELF2 |
| Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Drug | Source | PMID |
Top |
Related Diseases to FAT1-ELF2 |
| Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Disease | Source | PMID |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2021-Present -The University of Texas Health Science Center at Houston (UTHealth)
Web File Viewing | Emergency Information |Campus Carry|Site Policies