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Center for Computational Systems Medicine level2
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein Structure

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pLDDT scores

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Ramachandran Plot of Fusion Protein Structure

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:GPHN-RAD51B

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: GPHN-RAD51B
FusionPDB ID: 34267
FusionGDB2.0 ID: 34267
HgeneTgene
Gene symbol

GPHN

RAD51B

Gene ID

10243

5890

Gene namegephyrinRAD51 paralog B
SynonymsGEPH|GPH|GPHRYN|HKPX1|MOCODCR51H2|RAD51L1|REC2
Cytomap

14q23.3-q24.1

14q24.1

Type of geneprotein-codingprotein-coding
DescriptiongephyrinDNA repair protein RAD51 homolog 2RAD51 homolog BRecA-like proteinrecombination repair protein
Modification date2020031320200313
UniProtAcc

Q9NQX3

O15315

Ensembl transtripts involved in fusion geneENST idsENST00000305960, ENST00000315266, 
ENST00000459628, ENST00000478722, 
ENST00000543237, ENST00000544752, 
ENST00000469165, ENST00000390683, 
ENST00000471583, ENST00000487270, 
ENST00000487861, ENST00000488612, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score38 X 33 X 10=1254041 X 23 X 12=11316
# samples 4056
** MAII scorelog2(40/12540*10)=-4.97039353791468
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(56/11316*10)=-4.33679344445129
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: GPHN [Title/Abstract] AND RAD51B [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)GPHN(67243239)-RAD51B(68301797), # samples:2
RAD51B(68353921)-GPHN(67626132), # samples:6
Anticipated loss of major functional domain due to fusion event.GPHN-RAD51B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
GPHN-RAD51B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
RAD51B-GPHN seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
RAD51B-GPHN seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneGPHN

GO:0032324

molybdopterin cofactor biosynthetic process

26613940

HgeneGPHN

GO:0097112

gamma-aminobutyric acid receptor clustering

26613940


check buttonFusion gene breakpoints across GPHN (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across RAD51B (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-KK-A6E4-01AGPHNchr14

67243239

+RAD51Bchr14

68301797

+
ChimerDB4PRADTCGA-KK-A6E4GPHNchr14

67243239

+RAD51Bchr14

68301797

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000315266GPHNchr1467243239+ENST00000487861RAD51Bchr1468301797+2720132210252401458
ENST00000315266GPHNchr1467243239+ENST00000471583RAD51Bchr1468301797+2612132210252176383
ENST00000315266GPHNchr1467243239+ENST00000487270RAD51Bchr1468301797+3672132210252278417
ENST00000315266GPHNchr1467243239+ENST00000488612RAD51Bchr1468301797+2647132210252224399
ENST00000315266GPHNchr1467243239+ENST00000390683RAD51Bchr1468301797+2225132210252224400
ENST00000478722GPHNchr1467243239+ENST00000487861RAD51Bchr1468301797+2720132210252401458
ENST00000478722GPHNchr1467243239+ENST00000471583RAD51Bchr1468301797+2612132210252176383
ENST00000478722GPHNchr1467243239+ENST00000487270RAD51Bchr1468301797+3672132210252278417
ENST00000478722GPHNchr1467243239+ENST00000488612RAD51Bchr1468301797+2647132210252224399
ENST00000478722GPHNchr1467243239+ENST00000390683RAD51Bchr1468301797+2225132210252224400
ENST00000459628GPHNchr1467243239+ENST00000487861RAD51Bchr1468301797+19895912941670458
ENST00000459628GPHNchr1467243239+ENST00000471583RAD51Bchr1468301797+18815912941445383
ENST00000459628GPHNchr1467243239+ENST00000487270RAD51Bchr1468301797+29415912941547417
ENST00000459628GPHNchr1467243239+ENST00000488612RAD51Bchr1468301797+19165912941493399
ENST00000459628GPHNchr1467243239+ENST00000390683RAD51Bchr1468301797+14945912941493399
ENST00000543237GPHNchr1467243239+ENST00000487861RAD51Bchr1468301797+1623225151304429
ENST00000543237GPHNchr1467243239+ENST00000471583RAD51Bchr1468301797+1515225151079354
ENST00000543237GPHNchr1467243239+ENST00000487270RAD51Bchr1468301797+2575225151181388
ENST00000543237GPHNchr1467243239+ENST00000488612RAD51Bchr1468301797+1550225151127370
ENST00000543237GPHNchr1467243239+ENST00000390683RAD51Bchr1468301797+1128225151127370
ENST00000305960GPHNchr1467243239+ENST00000487861RAD51Bchr1468301797+161421661295429
ENST00000305960GPHNchr1467243239+ENST00000471583RAD51Bchr1468301797+150621661070354
ENST00000305960GPHNchr1467243239+ENST00000487270RAD51Bchr1468301797+256621661172388
ENST00000305960GPHNchr1467243239+ENST00000488612RAD51Bchr1468301797+154121661118370
ENST00000305960GPHNchr1467243239+ENST00000390683RAD51Bchr1468301797+111921661118370

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000315266ENST00000487861GPHNchr1467243239+RAD51Bchr1468301797+0.0021052690.9978947
ENST00000315266ENST00000471583GPHNchr1467243239+RAD51Bchr1468301797+0.0006869670.999313
ENST00000315266ENST00000487270GPHNchr1467243239+RAD51Bchr1468301797+0.0008131270.9991868
ENST00000315266ENST00000488612GPHNchr1467243239+RAD51Bchr1468301797+0.0010875550.99891245
ENST00000315266ENST00000390683GPHNchr1467243239+RAD51Bchr1468301797+0.0014524860.9985475
ENST00000478722ENST00000487861GPHNchr1467243239+RAD51Bchr1468301797+0.0021052690.9978947
ENST00000478722ENST00000471583GPHNchr1467243239+RAD51Bchr1468301797+0.0006869670.999313
ENST00000478722ENST00000487270GPHNchr1467243239+RAD51Bchr1468301797+0.0008131270.9991868
ENST00000478722ENST00000488612GPHNchr1467243239+RAD51Bchr1468301797+0.0010875550.99891245
ENST00000478722ENST00000390683GPHNchr1467243239+RAD51Bchr1468301797+0.0014524860.9985475
ENST00000459628ENST00000487861GPHNchr1467243239+RAD51Bchr1468301797+0.0011839640.998816
ENST00000459628ENST00000471583GPHNchr1467243239+RAD51Bchr1468301797+0.0002918270.9997081
ENST00000459628ENST00000487270GPHNchr1467243239+RAD51Bchr1468301797+0.000404950.9995951
ENST00000459628ENST00000488612GPHNchr1467243239+RAD51Bchr1468301797+0.0006852720.9993148
ENST00000459628ENST00000390683GPHNchr1467243239+RAD51Bchr1468301797+0.0007797310.99922025
ENST00000543237ENST00000487861GPHNchr1467243239+RAD51Bchr1468301797+0.0006502110.9993498
ENST00000543237ENST00000471583GPHNchr1467243239+RAD51Bchr1468301797+0.0001924020.99980766
ENST00000543237ENST00000487270GPHNchr1467243239+RAD51Bchr1468301797+0.0002291240.99977094
ENST00000543237ENST00000488612GPHNchr1467243239+RAD51Bchr1468301797+0.0003699690.99963
ENST00000543237ENST00000390683GPHNchr1467243239+RAD51Bchr1468301797+0.0003145380.9996855
ENST00000305960ENST00000487861GPHNchr1467243239+RAD51Bchr1468301797+0.000671720.99932826
ENST00000305960ENST00000471583GPHNchr1467243239+RAD51Bchr1468301797+0.0002030780.9997969
ENST00000305960ENST00000487270GPHNchr1467243239+RAD51Bchr1468301797+0.0002346360.99976534
ENST00000305960ENST00000488612GPHNchr1467243239+RAD51Bchr1468301797+0.0003840920.9996159
ENST00000305960ENST00000390683GPHNchr1467243239+RAD51Bchr1468301797+0.0003329660.99966705

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>34267_34267_1_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000305960_RAD51B_chr14_68301797_ENST00000390683_length(amino acids)=370AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA
LASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQEFWHICISGFS

--------------------------------------------------------------

>34267_34267_2_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000305960_RAD51B_chr14_68301797_ENST00000471583_length(amino acids)=354AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA

--------------------------------------------------------------

>34267_34267_3_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000305960_RAD51B_chr14_68301797_ENST00000487270_length(amino acids)=388AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA
LASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAE

--------------------------------------------------------------

>34267_34267_4_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000305960_RAD51B_chr14_68301797_ENST00000487861_length(amino acids)=429AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA
LASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQVVRTVARVSPR

--------------------------------------------------------------

>34267_34267_5_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000305960_RAD51B_chr14_68301797_ENST00000488612_length(amino acids)=370AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA
LASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQEFWHICISGFS

--------------------------------------------------------------

>34267_34267_6_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000315266_RAD51B_chr14_68301797_ENST00000390683_length(amino acids)=400AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_7_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000315266_RAD51B_chr14_68301797_ENST00000471583_length(amino acids)=383AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_8_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000315266_RAD51B_chr14_68301797_ENST00000487270_length(amino acids)=417AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_9_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000315266_RAD51B_chr14_68301797_ENST00000487861_length(amino acids)=458AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL
APFTSFVYTIKEEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALPPTNWATGIRT

--------------------------------------------------------------

>34267_34267_10_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000315266_RAD51B_chr14_68301797_ENST00000488612_length(amino acids)=399AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_11_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000459628_RAD51B_chr14_68301797_ENST00000390683_length(amino acids)=399AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_12_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000459628_RAD51B_chr14_68301797_ENST00000471583_length(amino acids)=383AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_13_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000459628_RAD51B_chr14_68301797_ENST00000487270_length(amino acids)=417AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_14_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000459628_RAD51B_chr14_68301797_ENST00000487861_length(amino acids)=458AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL
APFTSFVYTIKEEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALPPTNWATGIRT

--------------------------------------------------------------

>34267_34267_15_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000459628_RAD51B_chr14_68301797_ENST00000488612_length(amino acids)=399AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_16_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000478722_RAD51B_chr14_68301797_ENST00000390683_length(amino acids)=400AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

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>34267_34267_17_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000478722_RAD51B_chr14_68301797_ENST00000471583_length(amino acids)=383AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_18_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000478722_RAD51B_chr14_68301797_ENST00000487270_length(amino acids)=417AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_19_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000478722_RAD51B_chr14_68301797_ENST00000487861_length(amino acids)=458AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL
APFTSFVYTIKEEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALPPTNWATGIRT

--------------------------------------------------------------

>34267_34267_20_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000478722_RAD51B_chr14_68301797_ENST00000488612_length(amino acids)=399AA_BP=99
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL

--------------------------------------------------------------

>34267_34267_21_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000543237_RAD51B_chr14_68301797_ENST00000390683_length(amino acids)=370AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA
LASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQEFWHICISGFS

--------------------------------------------------------------

>34267_34267_22_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000543237_RAD51B_chr14_68301797_ENST00000471583_length(amino acids)=354AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA

--------------------------------------------------------------

>34267_34267_23_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000543237_RAD51B_chr14_68301797_ENST00000487270_length(amino acids)=388AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA
LASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAE

--------------------------------------------------------------

>34267_34267_24_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000543237_RAD51B_chr14_68301797_ENST00000487861_length(amino acids)=429AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA
LASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQVVRTVARVSPR

--------------------------------------------------------------

>34267_34267_25_GPHN-RAD51B_GPHN_chr14_67243239_ENST00000543237_RAD51B_chr14_68301797_ENST00000488612_length(amino acids)=370AA_BP=70
MGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKAYGIKAQRSADFSPAFLSTT
LSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
VHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGA
LASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQEFWHICISGFS

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr14:67243239/chr14:68301797)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GPHN

Q9NQX3

RAD51B

O15315

FUNCTION: Microtubule-associated protein involved in membrane protein-cytoskeleton interactions. It is thought to anchor the inhibitory glycine receptor (GLYR) to subsynaptic microtubules (By similarity). Acts as a major instructive molecule at inhibitory synapses, where it also clusters GABA type A receptors (PubMed:25025157, PubMed:26613940). {ECO:0000250|UniProtKB:Q03555, ECO:0000269|PubMed:25025157, ECO:0000269|PubMed:26613940}.; FUNCTION: Has also a catalytic activity and catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released. {ECO:0000269|PubMed:26613940}.FUNCTION: Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. May promote the assembly of presynaptic RAD51 nucleoprotein filaments. Binds single-stranded DNA and double-stranded DNA and has DNA-dependent ATPase activity. Part of the RAD21 paralog protein complex BCDX2 which acts in the BRCA1-BRCA2-dependent HR pathway. Upon DNA damage, BCDX2 acts downstream of BRCA2 recruitment and upstream of RAD51 recruitment. BCDX2 binds predominantly to the intersection of the four duplex arms of the Holliday junction and to junction of replication forks. The BCDX2 complex was originally reported to bind single-stranded DNA, single-stranded gaps in duplex DNA and specifically to nicks in duplex DNA. The BCDX2 subcomplex RAD51B:RAD51C exhibits single-stranded DNA-dependent ATPase activity suggesting an involvement in early stages of the HR pathway. {ECO:0000269|PubMed:11751635, ECO:0000269|PubMed:11751636, ECO:0000269|PubMed:11842113, ECO:0000269|PubMed:12441335, ECO:0000269|PubMed:23108668, ECO:0000269|PubMed:23149936}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneRAD51Bchr14:67243239chr14:68301797ENST00000390683110108_11566.0367.0Nucleotide bindingATP
TgeneRAD51Bchr14:67243239chr14:68301797ENST00000471583211108_11566.0351.0Nucleotide bindingATP
TgeneRAD51Bchr14:67243239chr14:68301797ENST00000487270211108_11566.0385.0Nucleotide bindingATP
TgeneRAD51Bchr14:67243239chr14:68301797ENST00000488612212108_11566.0495.6666666666667Nucleotide bindingATP

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneGPHNchr14:67243239chr14:68301797ENST00000315266+32214_16667.0737.0RegionNote=MPT Mo-transferase
HgeneGPHNchr14:67243239chr14:68301797ENST00000315266+322326_73667.0737.0RegionNote=MPT adenylyltransferase
HgeneGPHNchr14:67243239chr14:68301797ENST00000478722+32314_16667.0770.0RegionNote=MPT Mo-transferase
HgeneGPHNchr14:67243239chr14:68301797ENST00000478722+323326_73667.0770.0RegionNote=MPT adenylyltransferase


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Fusion Protein Structures

check button PDB and CIF files of the predicted fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.
Fusion protein PDB link (fusion AA seq ID in FusionPDB)HgeneHchrHbpHstrandTgeneTchrTbpTstrandAA seqLen(AA seq)
PDB file >>>958_GPHN_67243239_RAD51B_68301797_958_GPHN_67243239_RAD51B_68301797_ranked_0.pdbGPHN6724323967243239ENST00000390683RAD51Bchr1468301797+
MSRSPRRARSRPARSGLRFLPAPVSAVTALGNMATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKI
VPDEIEEIKAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAF
SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAR
EASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPL
APFTSFVYTIKEEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALPPTNWATGIRT
458


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pLDDT score distribution

check button pLDDT score distribution of the predicted wild-type structures of two partner proteins from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
GPHN_pLDDT.png
all structure
all structure
RAD51B_pLDDT.png
all structure
all structure

check button pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
all structure


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Ramachandran Plot of Fusion Protein Structure


check button Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.
Fusion AA seq ID in FusionPDB and their Ramachandran plots

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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors
RAD51BRAD51, RAD51C, RAD51D, XRCC2, SWSAP1, FAM9B, DKKL1, ARL4C, MUC20, ADAMTS4, HELQ, HNRNPL, SPDL1, BRCA1, TPT1, ABL1, MEOX2, RPAIN, ANAPC5, BAGE2, C15orf39, PRPF6, C5orf34, N4BP2L2, BANP, ANKHD1-EIF4EBP3, KLRC2, DSCC1, SATB2, ZNHIT6, PMS1, NUF2, APAF1, PRKACB, MAPRE2, CD300LB, PRKACG, TBC1D2B, MTR,


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
GPHNall structure
RAD51Ball structure


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneGPHNchr14:67243239chr14:68301797ENST00000315266+322140_31667.0737.0GABARAP
HgeneGPHNchr14:67243239chr14:68301797ENST00000478722+323140_31667.0770.0GABARAP
TgeneRAD51Bchr14:67243239chr14:68301797ENST000003906831101_7566.0367.0RAD51C
TgeneRAD51Bchr14:67243239chr14:68301797ENST000004715832111_7566.0351.0RAD51C
TgeneRAD51Bchr14:67243239chr14:68301797ENST000004872702111_7566.0385.0RAD51C
TgeneRAD51Bchr14:67243239chr14:68301797ENST000004886122121_7566.0495.6666666666667RAD51C


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Related Drugs to GPHN-RAD51B


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to GPHN-RAD51B


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneGPHNC1854990Molybdenum Cofactor Deficiency, Complementation Group C5CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HgeneGPHNC0001956Alcohol Use Disorder1CTD_human
HgeneGPHNC0001973Alcoholic Intoxication, Chronic1CTD_human
HgeneGPHNC0009171Cocaine Abuse1CTD_human
HgeneGPHNC0085762Alcohol abuse1CTD_human
HgeneGPHNC0236736Cocaine-Related Disorders1CTD_human
HgeneGPHNC0543888Epileptic encephalopathy1GENOMICS_ENGLAND
HgeneGPHNC0600427Cocaine Dependence1CTD_human
TgeneRAD51BC0006142Malignant neoplasm of breast1CTD_human
TgeneRAD51BC0013146Drug abuse1CTD_human
TgeneRAD51BC0013170Drug habituation1CTD_human
TgeneRAD51BC0013222Drug Use Disorders1CTD_human
TgeneRAD51BC0029231Organic Mental Disorders, Substance-Induced1CTD_human
TgeneRAD51BC0038580Substance Dependence1CTD_human
TgeneRAD51BC0038586Substance Use Disorders1CTD_human
TgeneRAD51BC0236969Substance-Related Disorders1CTD_human
TgeneRAD51BC0238033Carcinoma of Male Breast1CTD_human
TgeneRAD51BC0242788Breast Neoplasms, Male1CTD_human
TgeneRAD51BC0678222Breast Carcinoma1CTD_human
TgeneRAD51BC0740858Substance abuse problem1CTD_human
TgeneRAD51BC1257931Mammary Neoplasms, Human1CTD_human
TgeneRAD51BC1458155Mammary Neoplasms1CTD_human
TgeneRAD51BC1510472Drug Dependence1CTD_human
TgeneRAD51BC4316881Prescription Drug Abuse1CTD_human
TgeneRAD51BC4704874Mammary Carcinoma, Human1CTD_human