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Fusion Protein:HERC3-AFF1 |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: HERC3-AFF1 | FusionPDB ID: 36171 | FusionGDB2.0 ID: 36171 | Hgene | Tgene | Gene symbol | HERC3 | AFF1 | Gene ID | 8916 | 4299 |
Gene name | HECT and RLD domain containing E3 ubiquitin protein ligase 3 | AF4/FMR2 family member 1 | |
Synonyms | - | AF4|MLLT2|PBM1 | |
Cytomap | 4q22.1 | 4q21.3-q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | probable E3 ubiquitin-protein ligase HERC3HECT domain and RCC1-like domain-containing protein 3HECT-type E3 ubiquitin transferase HERC3hect domain and RLD 3 | AF4/FMR2 family member 1ALL1-fused gene from chromosome 4 proteinmyeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 2pre-B-cell monocytic leukemia partner 1proto-oncogene AF4 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q15034 | P51825 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000264345, ENST00000402738, ENST00000407637, ENST00000543130, ENST00000601319, | ENST00000511996, ENST00000307808, ENST00000395146, ENST00000544085, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 4 X 3 X 4=48 | 19 X 137 X 9=23427 |
# samples | 4 | 141 | |
** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(141/23427*10)=-4.05440515056027 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: HERC3 [Title/Abstract] AND AFF1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | HERC3(89571150)-AFF1(88052944), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | HERC3-AFF1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. HERC3-AFF1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | THCA | TCGA-DJ-A3VM | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000402738 | HERC3 | chr4 | 89571150 | + | ENST00000395146 | AFF1 | chr4 | 88052944 | + | 6534 | 625 | 239 | 1180 | 313 |
ENST00000402738 | HERC3 | chr4 | 89571150 | + | ENST00000307808 | AFF1 | chr4 | 88052944 | + | 6515 | 625 | 239 | 1177 | 312 |
ENST00000402738 | HERC3 | chr4 | 89571150 | + | ENST00000544085 | AFF1 | chr4 | 88052944 | + | 1591 | 625 | 239 | 1180 | 313 |
ENST00000407637 | HERC3 | chr4 | 89571150 | + | ENST00000395146 | AFF1 | chr4 | 88052944 | + | 6461 | 552 | 166 | 1107 | 313 |
ENST00000407637 | HERC3 | chr4 | 89571150 | + | ENST00000307808 | AFF1 | chr4 | 88052944 | + | 6442 | 552 | 166 | 1104 | 312 |
ENST00000407637 | HERC3 | chr4 | 89571150 | + | ENST00000544085 | AFF1 | chr4 | 88052944 | + | 1518 | 552 | 166 | 1107 | 313 |
ENST00000264345 | HERC3 | chr4 | 89571150 | + | ENST00000395146 | AFF1 | chr4 | 88052944 | + | 6325 | 416 | 30 | 971 | 313 |
ENST00000264345 | HERC3 | chr4 | 89571150 | + | ENST00000307808 | AFF1 | chr4 | 88052944 | + | 6306 | 416 | 30 | 968 | 312 |
ENST00000264345 | HERC3 | chr4 | 89571150 | + | ENST00000544085 | AFF1 | chr4 | 88052944 | + | 1382 | 416 | 30 | 971 | 313 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000402738 | ENST00000395146 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.001778084 | 0.99822193 |
ENST00000402738 | ENST00000307808 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.001628807 | 0.9983712 |
ENST00000402738 | ENST00000544085 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.019804727 | 0.9801952 |
ENST00000407637 | ENST00000395146 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.001739745 | 0.9982603 |
ENST00000407637 | ENST00000307808 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.001591764 | 0.99840826 |
ENST00000407637 | ENST00000544085 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.021013446 | 0.97898656 |
ENST00000264345 | ENST00000395146 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.001680694 | 0.9983193 |
ENST00000264345 | ENST00000307808 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.001538383 | 0.9984616 |
ENST00000264345 | ENST00000544085 | HERC3 | chr4 | 89571150 | + | AFF1 | chr4 | 88052944 | + | 0.019060345 | 0.9809396 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >36171_36171_1_HERC3-AFF1_HERC3_chr4_89571150_ENST00000264345_AFF1_chr4_88052944_ENST00000307808_length(amino acids)=312AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIASTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTRK -------------------------------------------------------------- >36171_36171_2_HERC3-AFF1_HERC3_chr4_89571150_ENST00000264345_AFF1_chr4_88052944_ENST00000395146_length(amino acids)=313AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIARSTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTR -------------------------------------------------------------- >36171_36171_3_HERC3-AFF1_HERC3_chr4_89571150_ENST00000264345_AFF1_chr4_88052944_ENST00000544085_length(amino acids)=313AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIARSTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTR -------------------------------------------------------------- >36171_36171_4_HERC3-AFF1_HERC3_chr4_89571150_ENST00000402738_AFF1_chr4_88052944_ENST00000307808_length(amino acids)=312AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIASTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTRK -------------------------------------------------------------- >36171_36171_5_HERC3-AFF1_HERC3_chr4_89571150_ENST00000402738_AFF1_chr4_88052944_ENST00000395146_length(amino acids)=313AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIARSTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTR -------------------------------------------------------------- >36171_36171_6_HERC3-AFF1_HERC3_chr4_89571150_ENST00000402738_AFF1_chr4_88052944_ENST00000544085_length(amino acids)=313AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIARSTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTR -------------------------------------------------------------- >36171_36171_7_HERC3-AFF1_HERC3_chr4_89571150_ENST00000407637_AFF1_chr4_88052944_ENST00000307808_length(amino acids)=312AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIASTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTRK -------------------------------------------------------------- >36171_36171_8_HERC3-AFF1_HERC3_chr4_89571150_ENST00000407637_AFF1_chr4_88052944_ENST00000395146_length(amino acids)=313AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIARSTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTR -------------------------------------------------------------- >36171_36171_9_HERC3-AFF1_HERC3_chr4_89571150_ENST00000407637_AFF1_chr4_88052944_ENST00000544085_length(amino acids)=313AA_BP=128 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVA CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLN KHFESSSKVAQAPSPCIARSTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTR -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr4:89571150/chr4:88052944) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
HERC3 | AFF1 |
FUNCTION: E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. {ECO:0000250}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000264345 | + | 2 | 24 | 1_51 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 1 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000264345 | + | 2 | 24 | 52_101 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 2 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000402738 | + | 4 | 26 | 1_51 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 1 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000402738 | + | 4 | 26 | 52_101 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 2 |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000264345 | + | 2 | 24 | 951_1050 | 128.66666666666666 | 1051.0 | Domain | HECT |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000402738 | + | 4 | 26 | 951_1050 | 128.66666666666666 | 1051.0 | Domain | HECT |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000264345 | + | 2 | 24 | 102_154 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 3 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000264345 | + | 2 | 24 | 156_207 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 4 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000264345 | + | 2 | 24 | 208_259 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 5 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000264345 | + | 2 | 24 | 261_311 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 6 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000264345 | + | 2 | 24 | 313_366 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 7 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000402738 | + | 4 | 26 | 102_154 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 3 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000402738 | + | 4 | 26 | 156_207 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 4 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000402738 | + | 4 | 26 | 208_259 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 5 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000402738 | + | 4 | 26 | 261_311 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 6 |
Hgene | HERC3 | chr4:89571150 | chr4:88052944 | ENST00000402738 | + | 4 | 26 | 313_366 | 128.66666666666666 | 1051.0 | Repeat | Note=RCC1 7 |
Tgene | AFF1 | chr4:89571150 | chr4:88052944 | ENST00000307808 | 15 | 20 | 483_492 | 1026.6666666666667 | 1211.0 | Compositional bias | Note=Poly-Ser | |
Tgene | AFF1 | chr4:89571150 | chr4:88052944 | ENST00000307808 | 15 | 20 | 835_843 | 1026.6666666666667 | 1211.0 | Compositional bias | Note=Poly-Ser | |
Tgene | AFF1 | chr4:89571150 | chr4:88052944 | ENST00000307808 | 15 | 20 | 866_869 | 1026.6666666666667 | 1211.0 | Compositional bias | Note=Poly-Pro | |
Tgene | AFF1 | chr4:89571150 | chr4:88052944 | ENST00000307808 | 15 | 20 | 871_874 | 1026.6666666666667 | 1211.0 | Compositional bias | Note=Poly-Ser | |
Tgene | AFF1 | chr4:89571150 | chr4:88052944 | ENST00000395146 | 16 | 21 | 483_492 | 1033.6666666666667 | 1219.0 | Compositional bias | Note=Poly-Ser | |
Tgene | AFF1 | chr4:89571150 | chr4:88052944 | ENST00000395146 | 16 | 21 | 835_843 | 1033.6666666666667 | 1219.0 | Compositional bias | Note=Poly-Ser | |
Tgene | AFF1 | chr4:89571150 | chr4:88052944 | ENST00000395146 | 16 | 21 | 866_869 | 1033.6666666666667 | 1219.0 | Compositional bias | Note=Poly-Pro | |
Tgene | AFF1 | chr4:89571150 | chr4:88052944 | ENST00000395146 | 16 | 21 | 871_874 | 1033.6666666666667 | 1219.0 | Compositional bias | Note=Poly-Ser |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
AFF1 | MLLT1, CCNT1, NT5E, MLLT3, CDK9, AFF4, KMT2A, AFF1, BRD4, RELA, NPM1, PCSK1, MLLT10, DOT1L, POLR2A, DDX6, HEXIM1, HIST3H3, NSD1, CARM1, SIAH1, SIAH2, SMAD9, tat, MED26, EAF1, ELL2, LARP7, ELL3, HDAC1, MYH7, SLC16A6, ZNF526, Mllt1, Mad2l1bp, Rrbp1, Rcc1, VDR, PIP4K2A, CAMKV, TRIM25, HNRNPL, ESR2, KIAA1429, SASH1, DYRK1A, ARFIP1, MRPL12, KIF20A, CCAR2, FGF12, PLCD3, EPB41L1, EPB41L3, |
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Gene | STRING network |
HERC3 | |
AFF1 | ![]() |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to HERC3-AFF1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to HERC3-AFF1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |