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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:KCNH7-SLC38A11

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: KCNH7-SLC38A11
FusionPDB ID: 41406
FusionGDB2.0 ID: 41406
HgeneTgene
Gene symbol

KCNH7

SLC38A11

Gene ID

90134

151258

Gene namepotassium voltage-gated channel subfamily H member 7solute carrier family 38 member 11
SynonymsERG3|HERG3|Kv11.3AVT2
Cytomap

2q24.2

2q24.3

Type of geneprotein-codingprotein-coding
Descriptionpotassium voltage-gated channel subfamily H member 7ERG-3eag-related protein 3ether-a-go-go-related gene potassium channel 3ether-a-go-go-related protein 3potassium channel subunit HERG-3potassium channel, voltage gated eag related subfamily H, membputative sodium-coupled neutral amino acid transporter 11
Modification date2020031320200313
UniProtAcc

Q9NS40

.
Ensembl transtripts involved in fusion geneENST idsENST00000328032, ENST00000332142, 
ENST00000477019, 		ENST00000493887, 
ENST00000303735, ENST00000409058, 
ENST00000409149, ENST00000409662, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score1 X 2 X 1=26 X 5 X 7=210
# samples 211
** MAII scorelog2(2/2*10)=3.32192809488736log2(11/210*10)=-0.932885804141463
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: KCNH7 [Title/Abstract] AND SLC38A11 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)KCNH7(163693047)-SLC38A11(165796066), # samples:2
Anticipated loss of major functional domain due to fusion event.KCNH7-SLC38A11 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
KCNH7-SLC38A11 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
KCNH7-SLC38A11 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
KCNH7-SLC38A11 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across KCNH7 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SLC38A11 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-C8-A26Y-01AKCNH7chr2

163693047

-SLC38A11chr2

165796066

-
ChimerDB4BRCATCGA-C8-A26YKCNH7chr2

163693046

-SLC38A11chr2

165796066

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000332142KCNH7chr2163693047-ENST00000303735SLC38A11chr2165796066-36174071001365421
ENST00000332142KCNH7chr2163693047-ENST00000409149SLC38A11chr2165796066-14744071001365421
ENST00000332142KCNH7chr2163693047-ENST00000409058SLC38A11chr2165796066-14694071001365421
ENST00000332142KCNH7chr2163693047-ENST00000409662SLC38A11chr2165796066-14294071001365421
ENST00000328032KCNH7chr2163693047-ENST00000303735SLC38A11chr2165796066-37295192121477421
ENST00000328032KCNH7chr2163693047-ENST00000409149SLC38A11chr2165796066-15865192121477421
ENST00000328032KCNH7chr2163693047-ENST00000409058SLC38A11chr2165796066-15815192121477421
ENST00000328032KCNH7chr2163693047-ENST00000409662SLC38A11chr2165796066-15415192121477421
ENST00000332142KCNH7chr2163693046-ENST00000303735SLC38A11chr2165796066-36174071001365421
ENST00000332142KCNH7chr2163693046-ENST00000409149SLC38A11chr2165796066-14744071001365421
ENST00000332142KCNH7chr2163693046-ENST00000409058SLC38A11chr2165796066-14694071001365421
ENST00000332142KCNH7chr2163693046-ENST00000409662SLC38A11chr2165796066-14294071001365421
ENST00000328032KCNH7chr2163693046-ENST00000303735SLC38A11chr2165796066-37295192121477421
ENST00000328032KCNH7chr2163693046-ENST00000409149SLC38A11chr2165796066-15865192121477421
ENST00000328032KCNH7chr2163693046-ENST00000409058SLC38A11chr2165796066-15815192121477421
ENST00000328032KCNH7chr2163693046-ENST00000409662SLC38A11chr2165796066-15415192121477421

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000332142ENST00000303735KCNH7chr2163693047-SLC38A11chr2165796066-0.0005141650.99948585
ENST00000332142ENST00000409149KCNH7chr2163693047-SLC38A11chr2165796066-0.000639610.9993604
ENST00000332142ENST00000409058KCNH7chr2163693047-SLC38A11chr2165796066-0.0006338690.9993661
ENST00000332142ENST00000409662KCNH7chr2163693047-SLC38A11chr2165796066-0.0006664870.99933344
ENST00000328032ENST00000303735KCNH7chr2163693047-SLC38A11chr2165796066-0.0005270.99947304
ENST00000328032ENST00000409149KCNH7chr2163693047-SLC38A11chr2165796066-0.0006416170.99935836
ENST00000328032ENST00000409058KCNH7chr2163693047-SLC38A11chr2165796066-0.0006380580.99936193
ENST00000328032ENST00000409662KCNH7chr2163693047-SLC38A11chr2165796066-0.0007130470.99928695
ENST00000332142ENST00000303735KCNH7chr2163693046-SLC38A11chr2165796066-0.0005141650.99948585
ENST00000332142ENST00000409149KCNH7chr2163693046-SLC38A11chr2165796066-0.000639610.9993604
ENST00000332142ENST00000409058KCNH7chr2163693046-SLC38A11chr2165796066-0.0006338690.9993661
ENST00000332142ENST00000409662KCNH7chr2163693046-SLC38A11chr2165796066-0.0006664870.99933344
ENST00000328032ENST00000303735KCNH7chr2163693046-SLC38A11chr2165796066-0.0005270.99947304
ENST00000328032ENST00000409149KCNH7chr2163693046-SLC38A11chr2165796066-0.0006416170.99935836
ENST00000328032ENST00000409058KCNH7chr2163693046-SLC38A11chr2165796066-0.0006380580.99936193
ENST00000328032ENST00000409662KCNH7chr2163693046-SLC38A11chr2165796066-0.0007130470.99928695

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>41406_41406_1_KCNH7-SLC38A11_KCNH7_chr2_163693046_ENST00000328032_SLC38A11_chr2_165796066_ENST00000303735_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_2_KCNH7-SLC38A11_KCNH7_chr2_163693046_ENST00000328032_SLC38A11_chr2_165796066_ENST00000409058_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_3_KCNH7-SLC38A11_KCNH7_chr2_163693046_ENST00000328032_SLC38A11_chr2_165796066_ENST00000409149_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_4_KCNH7-SLC38A11_KCNH7_chr2_163693046_ENST00000328032_SLC38A11_chr2_165796066_ENST00000409662_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_5_KCNH7-SLC38A11_KCNH7_chr2_163693046_ENST00000332142_SLC38A11_chr2_165796066_ENST00000303735_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_6_KCNH7-SLC38A11_KCNH7_chr2_163693046_ENST00000332142_SLC38A11_chr2_165796066_ENST00000409058_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_7_KCNH7-SLC38A11_KCNH7_chr2_163693046_ENST00000332142_SLC38A11_chr2_165796066_ENST00000409149_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_8_KCNH7-SLC38A11_KCNH7_chr2_163693046_ENST00000332142_SLC38A11_chr2_165796066_ENST00000409662_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_9_KCNH7-SLC38A11_KCNH7_chr2_163693047_ENST00000328032_SLC38A11_chr2_165796066_ENST00000303735_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_10_KCNH7-SLC38A11_KCNH7_chr2_163693047_ENST00000328032_SLC38A11_chr2_165796066_ENST00000409058_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_11_KCNH7-SLC38A11_KCNH7_chr2_163693047_ENST00000328032_SLC38A11_chr2_165796066_ENST00000409149_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_12_KCNH7-SLC38A11_KCNH7_chr2_163693047_ENST00000328032_SLC38A11_chr2_165796066_ENST00000409662_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_13_KCNH7-SLC38A11_KCNH7_chr2_163693047_ENST00000332142_SLC38A11_chr2_165796066_ENST00000303735_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_14_KCNH7-SLC38A11_KCNH7_chr2_163693047_ENST00000332142_SLC38A11_chr2_165796066_ENST00000409058_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_15_KCNH7-SLC38A11_KCNH7_chr2_163693047_ENST00000332142_SLC38A11_chr2_165796066_ENST00000409149_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

>41406_41406_16_KCNH7-SLC38A11_KCNH7_chr2_163693047_ENST00000332142_SLC38A11_chr2_165796066_ENST00000409662_length(amino acids)=421AA_BP=102
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLHGPETKRHDIAQIAQALLGSE
ERKVEVTYYHKNVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAI
QAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILT
YPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVM

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:163693047/chr2:165796066)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
KCNH7

Q9NS40

.
FUNCTION: Pore-forming (alpha) subunit of voltage-gated potassium channel. Channel properties may be modulated by cAMP and subunit assembly.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-2841_70102.33333333333333733.0DomainNote=PAS
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-21641_70102.333333333333331197.0DomainNote=PAS
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-2841_70102.33333333333333733.0DomainNote=PAS
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-21641_70102.333333333333331197.0DomainNote=PAS
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000303735210121_14165.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000303735210156_17665.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000303735210202_22265.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000303735210241_26365.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000303735210279_29965.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000303735210301_32165.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000303735210340_36065.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST0000030373521093_11365.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409149311121_14187.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409149311156_17687.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409149311202_22287.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409149311241_26387.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409149311279_29987.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409149311301_32187.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409149311340_36087.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST0000040914931193_11387.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409662513121_14187.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409662513156_17687.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409662513202_22287.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409662513241_26387.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409662513279_29987.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409662513301_32187.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST00000409662513340_36087.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST0000040966251393_11387.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000303735210121_14165.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000303735210156_17665.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000303735210202_22265.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000303735210241_26365.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000303735210279_29965.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000303735210301_32165.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000303735210340_36065.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST0000030373521093_11365.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409149311121_14187.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409149311156_17687.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409149311202_22287.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409149311241_26387.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409149311279_29987.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409149311301_32187.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409149311340_36087.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST0000040914931193_11387.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409662513121_14187.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409662513156_17687.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409662513202_22287.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409662513241_26387.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409662513279_29987.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409662513301_32187.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST00000409662513340_36087.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST0000040966251393_11387.33333333333333407.0TransmembraneHelical

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-2892_144102.33333333333333733.0DomainNote=PAC
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-21692_144102.333333333333331197.0DomainNote=PAC
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-2892_144102.33333333333333733.0DomainNote=PAC
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-21692_144102.333333333333331197.0DomainNote=PAC
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28615_635102.33333333333333733.0IntramembranePore-forming%3B Name%3DSegment H5
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216615_635102.333333333333331197.0IntramembranePore-forming%3B Name%3DSegment H5
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28615_635102.33333333333333733.0IntramembranePore-forming%3B Name%3DSegment H5
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216615_635102.333333333333331197.0IntramembranePore-forming%3B Name%3DSegment H5
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28627_632102.33333333333333733.0MotifSelectivity filter
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216627_632102.333333333333331197.0MotifSelectivity filter
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28627_632102.33333333333333733.0MotifSelectivity filter
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216627_632102.333333333333331197.0MotifSelectivity filter
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28745_862102.33333333333333733.0Nucleotide bindingNote=cNMP
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216745_862102.333333333333331197.0Nucleotide bindingNote=cNMP
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28745_862102.33333333333333733.0Nucleotide bindingNote=cNMP
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216745_862102.333333333333331197.0Nucleotide bindingNote=cNMP
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-281_412102.33333333333333733.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28434_449102.33333333333333733.0Topological domainExtracellular
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28471_494102.33333333333333733.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28516_521102.33333333333333733.0Topological domainExtracellular
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28543_549102.33333333333333733.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28571_614102.33333333333333733.0Topological domainExtracellular
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28636_641102.33333333333333733.0Topological domainExtracellular
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28663_1196102.33333333333333733.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-2161_412102.333333333333331197.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216434_449102.333333333333331197.0Topological domainExtracellular
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216471_494102.333333333333331197.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216516_521102.333333333333331197.0Topological domainExtracellular
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216543_549102.333333333333331197.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216571_614102.333333333333331197.0Topological domainExtracellular
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216636_641102.333333333333331197.0Topological domainExtracellular
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216663_1196102.333333333333331197.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-281_412102.33333333333333733.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28434_449102.33333333333333733.0Topological domainExtracellular
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28471_494102.33333333333333733.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28516_521102.33333333333333733.0Topological domainExtracellular
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28543_549102.33333333333333733.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28571_614102.33333333333333733.0Topological domainExtracellular
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28636_641102.33333333333333733.0Topological domainExtracellular
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28663_1196102.33333333333333733.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-2161_412102.333333333333331197.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216434_449102.333333333333331197.0Topological domainExtracellular
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216471_494102.333333333333331197.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216516_521102.333333333333331197.0Topological domainExtracellular
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216543_549102.333333333333331197.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216571_614102.333333333333331197.0Topological domainExtracellular
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216636_641102.333333333333331197.0Topological domainExtracellular
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216663_1196102.333333333333331197.0Topological domainCytoplasmic
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28413_433102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S1
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28450_470102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S2
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28495_515102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S3
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28522_542102.33333333333333733.0TransmembraneHelical%3B Voltage-sensor%3B Name%3DSegment S4
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28550_570102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S5
HgeneKCNH7chr2:163693046chr2:165796066ENST00000328032-28642_662102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S6
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216413_433102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S1
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216450_470102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S2
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216495_515102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S3
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216522_542102.333333333333331197.0TransmembraneHelical%3B Voltage-sensor%3B Name%3DSegment S4
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216550_570102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S5
HgeneKCNH7chr2:163693046chr2:165796066ENST00000332142-216642_662102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S6
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28413_433102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S1
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28450_470102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S2
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28495_515102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S3
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28522_542102.33333333333333733.0TransmembraneHelical%3B Voltage-sensor%3B Name%3DSegment S4
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28550_570102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S5
HgeneKCNH7chr2:163693047chr2:165796066ENST00000328032-28642_662102.33333333333333733.0TransmembraneHelical%3B Name%3DSegment S6
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216413_433102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S1
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216450_470102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S2
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216495_515102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S3
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216522_542102.333333333333331197.0TransmembraneHelical%3B Voltage-sensor%3B Name%3DSegment S4
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216550_570102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S5
HgeneKCNH7chr2:163693047chr2:165796066ENST00000332142-216642_662102.333333333333331197.0TransmembraneHelical%3B Name%3DSegment S6
TgeneSLC38A11chr2:163693046chr2:165796066ENST000003037352101_765.33333333333333385.0Topological domainCytoplasmic
TgeneSLC38A11chr2:163693046chr2:165796066ENST000004091493111_787.33333333333333407.0Topological domainCytoplasmic
TgeneSLC38A11chr2:163693046chr2:165796066ENST000004096625131_787.33333333333333407.0Topological domainCytoplasmic
TgeneSLC38A11chr2:163693047chr2:165796066ENST000003037352101_765.33333333333333385.0Topological domainCytoplasmic
TgeneSLC38A11chr2:163693047chr2:165796066ENST000004091493111_787.33333333333333407.0Topological domainCytoplasmic
TgeneSLC38A11chr2:163693047chr2:165796066ENST000004096625131_787.33333333333333407.0Topological domainCytoplasmic
TgeneSLC38A11chr2:163693046chr2:165796066ENST0000030373521048_6865.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST000003037352108_2865.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST0000040914931148_6887.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST000004091493118_2887.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST0000040966251348_6887.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693046chr2:165796066ENST000004096625138_2887.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST0000030373521048_6865.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST000003037352108_2865.33333333333333385.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST0000040914931148_6887.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST000004091493118_2887.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST0000040966251348_6887.33333333333333407.0TransmembraneHelical
TgeneSLC38A11chr2:163693047chr2:165796066ENST000004096625138_2887.33333333333333407.0TransmembraneHelical


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
KCNH7
SLC38A11


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to KCNH7-SLC38A11


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to KCNH7-SLC38A11


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource