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Fusion Protein:LTBP1-ZDHHC2 |
Fusion Protein Summary |
 Fusion gene summary |
| Fusion partner gene information | Fusion gene name: LTBP1-ZDHHC2 | FusionPDB ID: 50278 | FusionGDB2.0 ID: 50278 | Hgene | Tgene | Gene symbol | LTBP1 | ZDHHC2 | Gene ID | 4052 | 51201 |
| Gene name | latent transforming growth factor beta binding protein 1 | zinc finger DHHC-type palmitoyltransferase 2 | |
| Synonyms | - | DHHC2|ZNF372 | |
| Cytomap | 2p22.3 | 8p22 | |
| Type of gene | protein-coding | protein-coding | |
| Description | latent-transforming growth factor beta-binding protein 1LTBP-1TGF-beta1-BP-1transforming growth factor beta-1-binding protein 1 | palmitoyltransferase ZDHHC2DHHC-2reamrecreduced expression associated with metastasis proteinreduced expression in cancer proteintestis tissue sperm-binding protein Li 56ezinc finger DHHC domain-containing protein 2zinc finger DHHC-type containing | |
| Modification date | 20200329 | 20200327 | |
| UniProtAcc | Q14766 | . | |
| Ensembl transtripts involved in fusion gene | ENST ids | ENST00000272273, ENST00000354476, ENST00000390003, ENST00000402934, ENST00000404525, ENST00000404816, ENST00000407925, ENST00000418533, ENST00000498013, | ENST00000262096, |
| Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 19 X 16 X 9=2736 | 7 X 8 X 5=280 |
| # samples | 29 | 8 | |
| ** MAII score | log2(29/2736*10)=-3.23794342487096 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/280*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context (manual curation of fusion genes in FusionPDB) | PubMed: LTBP1 [Title/Abstract] AND ZDHHC2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | ZDHHC2(17014362)-LTBP1(33572434), # samples:2 LTBP1(33540336)-ZDHHC2(17042298), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | LTBP1-ZDHHC2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. LTBP1-ZDHHC2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. LTBP1-ZDHHC2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. LTBP1-ZDHHC2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. ZDHHC2-LTBP1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ZDHHC2-LTBP1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | LTBP1 | GO:0035583 | sequestering of TGFbeta in extracellular matrix | 2022183|8617200 |
| Hgene | LTBP1 | GO:1901388 | regulation of transforming growth factor beta activation | 2022183|8617200 |
| Tgene | ZDHHC2 | GO:0018345 | protein palmitoylation | 23034182 |
| Fusion gene breakpoints across LTBP1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across ZDHHC2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
| Fusion gene information from FusionGDB2.0. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | BRCA | TCGA-AR-A0TU-01A | LTBP1 | chr2 | 33540336 | - | ZDHHC2 | chr8 | 17042298 | + |
| ChimerDB4 | BRCA | TCGA-AR-A0TU-01A | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + |
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Fusion ORF Analysis |
| Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000404816 | LTBP1 | chr2 | 33540336 | + | ENST00000262096 | ZDHHC2 | chr8 | 17042298 | + | 9635 | 4083 | 32 | 5056 | 1674 |
| ENST00000354476 | LTBP1 | chr2 | 33540336 | + | ENST00000262096 | ZDHHC2 | chr8 | 17042298 | + | 9308 | 3756 | 11 | 4729 | 1572 |
| ENST00000390003 | LTBP1 | chr2 | 33540336 | + | ENST00000262096 | ZDHHC2 | chr8 | 17042298 | + | 8448 | 2896 | 141 | 3869 | 1242 |
| ENST00000418533 | LTBP1 | chr2 | 33540336 | + | ENST00000262096 | ZDHHC2 | chr8 | 17042298 | + | 8445 | 2893 | 141 | 3866 | 1241 |
| ENST00000402934 | LTBP1 | chr2 | 33540336 | + | ENST00000262096 | ZDHHC2 | chr8 | 17042298 | + | 8258 | 2706 | 113 | 3679 | 1188 |
| ENST00000404525 | LTBP1 | chr2 | 33540336 | + | ENST00000262096 | ZDHHC2 | chr8 | 17042298 | + | 8244 | 2692 | 99 | 3665 | 1188 |
| ENST00000407925 | LTBP1 | chr2 | 33540336 | + | ENST00000262096 | ZDHHC2 | chr8 | 17042298 | + | 8385 | 2833 | 81 | 3806 | 1241 |
| ENST00000272273 | LTBP1 | chr2 | 33540336 | + | ENST00000262096 | ZDHHC2 | chr8 | 17042298 | + | 6310 | 758 | 154 | 1731 | 525 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000404816 | ENST00000262096 | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + | 0.000102664 | 0.99989736 |
| ENST00000354476 | ENST00000262096 | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + | 0.000122818 | 0.9998772 |
| ENST00000390003 | ENST00000262096 | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + | 7.07E-05 | 0.9999293 |
| ENST00000418533 | ENST00000262096 | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + | 3.14E-05 | 0.99996865 |
| ENST00000402934 | ENST00000262096 | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + | 6.89E-05 | 0.9999311 |
| ENST00000404525 | ENST00000262096 | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + | 6.75E-05 | 0.9999325 |
| ENST00000407925 | ENST00000262096 | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + | 2.86E-05 | 0.9999714 |
| ENST00000272273 | ENST00000262096 | LTBP1 | chr2 | 33540336 | + | ZDHHC2 | chr8 | 17042298 | + | 9.76E-05 | 0.99990237 |
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Fusion Amino Acid Sequences |
| For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >50278_50278_1_LTBP1-ZDHHC2_LTBP1_chr2_33540336_ENST00000272273_ZDHHC2_chr8_17042298_ENST00000262096_length(amino acids)=525AA_BP=201 MEPNVCANGDCSNLEGSYMCSCHKGYTRTPDHKHCRDIDECQQGNLCVNGQCKNTEGSFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAH GQCRNTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTAGSYDCTCPDGFQLDDNKTCQDINECEHPGLCGPQGECLNTE GSFHCVCQQGFSISADGRTCEVSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAA KDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGL PDTQAKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCS -------------------------------------------------------------- >50278_50278_2_LTBP1-ZDHHC2_LTBP1_chr2_33540336_ENST00000354476_ZDHHC2_chr8_17042298_ENST00000262096_length(amino acids)=1572AA_BP=1248 MGPAMAGAWLRWGLLLWAGLLASSAHGRLRRITYVVHPGPGLAAGALPLSGPPRSRTFNVALNARYSRSSAAAGAPSRASPGVPSERTRR TSKPGGAALQGLRPPPPPPPEPARPAVPGGQLHPNPGGHPAAAPFTKQGRQVVRSKVPQETQSGGGSRLQVHQKQQLQGVNVCGGRCCHG WSKAPGSQRCTKPSCVPPCQNGGMCLRPQLCVCKPGTKGKACETIAAQDTSSPVFGGQSPGAASSWGPPEQAAKHTSSKKADTLPRVSPV AQMTLTLKPKPSVGLPQQIHSQVTPLSSQSVVIHHGQTQEYVLKPKYFPAQKGISGEQSTEGSFPLRYVQDQVAAPFQLSNHTGRIKVVF TPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRVVICHLPCMNGGQCSSRDKCQCPPNFTGKLCQIPVHGASVPKLYQHS QQPGKALGTHVIHSTHTLPLTVTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGPTGQKTKEAQPGQSQVSYQGLPVQKTQTIHS TYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQKCPKKPSYHGYNQMMECLPGYKRVNNTFCQD INECQLQGVCPNGECLNTMGSYRCTCKIGFGPDPTFSSCVPDPPVISEEKGPCYRLVSSGRQCMHPLSVHLTKQLCCCSVGKAWGPHCEK CPLPGTAAFKEICPGGMGYTVSGVHRRRPIHHHVGKGPVFVKPKNTQPVAKSTHPPPLPAKEEPVEALTFSREHGPGVAEPEVATAPPEK EIPSLDQEKTKLEPGQPQLSPGISTIHLHPQFPGIVIEKTSPPVPVEVAPEASTSSASQVIAPTQVTEINECTVNPDICGAGHCINLPVR YTCICYEGYRFSEQQRKCVDIDECTQVQHLCSQGRCENTEGSFLCICPAGFMASEEGTNCIDVDECLRPDVCGEGHCVNTVGAFRCEYCD SGYRMTQRGRCEDIDECLNPSTCPDEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLEPNVCANGDCSNLEGSYMCSCHKGYTRTPDHK HCRDIDECQQGNLCVNGQCKNTEGSFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAHGQCRNTEGSFQCVCDQGYRASGLGDHCEDINEC LEDKSVCQRGDCINTAGSYDCTCPDGFQLDDNKTCQDINECEHPGLCGPQGECLNTEGSFHCVCQQGFSISADGRTCEVSMENTGEQVVC LMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSV CDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQAKFHIMFLFFAAAMFSVSLSSLFGYHCWL VSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFPTCLVNQDPEQASTPAGLNSTAKNLENHQFPA -------------------------------------------------------------- >50278_50278_3_LTBP1-ZDHHC2_LTBP1_chr2_33540336_ENST00000390003_ZDHHC2_chr8_17042298_ENST00000262096_length(amino acids)=1242AA_BP=918 MDTKLMCLLFFFSLPPLLVSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRVVICHLPCMNGGQCSSR DKCQCPPNFTGKLCQIPVHGASVPKLYQHSQQPGKALGTHVIHSTHTLPLTVTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGP TGQKTKEAQPGQSQVSYQGLPVQKTQTIHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQK CPKKPSYHGYNQMMECLPGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRCTCKIGFGPDPTFSSCVPDPPVISEEKGPCYRLVSSG RQCMHPLSVHLTKQLCCCSVGKAWGPHCEKCPLPGTAAFKEICPGGMGYTVSGVHRRRPIHHHVGKGPVFVKPKNTQPVAKSTHPPPLPA KEEPVEALTFSREHGPGVAEPEVATAPPEKEIPSLDQEKTKLEPGQPQLSPGISTIHLHPQFPGIVIEKTSPPVPVEVAPEASTSSASQV IAPTQVTEINECTVNPDICGAGHCINLPVRYTCICYEGYRFSEQQRKCVDIDECTQVQHLCSQGRCENTEGSFLCICPAGFMASEEGTNC IDVDECLRPDVCGEGHCVNTVGAFRCEYCDSGYRMTQRGRCEDIDECLNPSTCPDEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLEP NVCANGDCSNLEGSYMCSCHKGYTRTPDHKHCRDIDECQQGNLCVNGQCKNTEGSFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAHGQC RNTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTAGSYDCTCPDGFQLDDNKTCQDINECEHPGLCGPQGECLNTEGSF HCVCQQGFSISADGRTCEVSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDL PIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDT QAKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFPT -------------------------------------------------------------- >50278_50278_4_LTBP1-ZDHHC2_LTBP1_chr2_33540336_ENST00000402934_ZDHHC2_chr8_17042298_ENST00000262096_length(amino acids)=1188AA_BP=864 MDTKLMCLLFFFSLPPLLVSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRVVICHLPCMNGGQCSSR DKCQCPPNFTGKLCQIPVHGASVPKLYQHSQQPGKALGTHVIHSTHTLPLTVTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGP TGQKTKEAQPGQSQVSYQGLPVQKTQTIHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQK CPKKPSYHGYNQMMECLPGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRCTCKIGFGPDPTFSSCVPDPPVISEEKGPCYRLVSSG RQCMHPLSVHLTKQLCCCSVGKAWGPHCEKCPLPGTAKEEPVEALTFSREHGPGVAEPEVATAPPEKEIPSLDQEKTKLEPGQPQLSPGI STIHLHPQFPVVIEKTSPPVPVEVAPEASTSSASQVIAPTQVTEINECTVNPDICGAGHCINLPVRYTCICYEGYRFSEQQRKCVDIDEC TQVQHLCSQGRCENTEGSFLCICPAGFMASEEGTNCIDVDECLRPDVCGEGHCVNTVGAFRCEYCDSGYRMTQRGRCEDIDECLNPSTCP DEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLEPNVCANGDCSNLEGSYMCSCHKGYTRTPDHKHCRDIDECQQGNLCVNGQCKNTEG SFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAHGQCRNTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTAGSYDCTCP DGFQLDDNKTCQDINECEHPGLCGPQGECLNTEGSFHCVCQQGFSISADGRTCEVSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPM NPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNY KFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQAKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNG FSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFPTCLVNQDPEQASTPAGLNSTAKNLENHQFPAKPLRESQSHLLTDSQSWTESSINP -------------------------------------------------------------- >50278_50278_5_LTBP1-ZDHHC2_LTBP1_chr2_33540336_ENST00000404525_ZDHHC2_chr8_17042298_ENST00000262096_length(amino acids)=1188AA_BP=864 MDTKLMCLLFFFSLPPLLVSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRVVICHLPCMNGGQCSSR DKCQCPPNFTGKLCQIPVHGASVPKLYQHSQQPGKALGTHVIHSTHTLPLTVTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGP TGQKTKEAQPGQSQVSYQGLPVQKTQTIHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQK CPKKPSYHGYNQMMECLPGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRCTCKIGFGPDPTFSSCVPDPPVISEEKGPCYRLVSSG RQCMHPLSVHLTKQLCCCSVGKAWGPHCEKCPLPGTAKEEPVEALTFSREHGPGVAEPEVATAPPEKEIPSLDQEKTKLEPGQPQLSPGI STIHLHPQFPVVIEKTSPPVPVEVAPEASTSSASQVIAPTQVTEINECTVNPDICGAGHCINLPVRYTCICYEGYRFSEQQRKCVDIDEC TQVQHLCSQGRCENTEGSFLCICPAGFMASEEGTNCIDVDECLRPDVCGEGHCVNTVGAFRCEYCDSGYRMTQRGRCEDIDECLNPSTCP DEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLEPNVCANGDCSNLEGSYMCSCHKGYTRTPDHKHCRDIDECQQGNLCVNGQCKNTEG SFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAHGQCRNTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTAGSYDCTCP DGFQLDDNKTCQDINECEHPGLCGPQGECLNTEGSFHCVCQQGFSISADGRTCEVSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPM NPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNY KFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQAKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNG FSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFPTCLVNQDPEQASTPAGLNSTAKNLENHQFPAKPLRESQSHLLTDSQSWTESSINP -------------------------------------------------------------- >50278_50278_6_LTBP1-ZDHHC2_LTBP1_chr2_33540336_ENST00000404816_ZDHHC2_chr8_17042298_ENST00000262096_length(amino acids)=1674AA_BP=1350 MRRALQPPAGRADPHLARPAPLAPPRSPGSALPTPTPSSCSQPQSAGVWGRSAARRASSLATDLVSSRLSRALGSSRGSPNARGKASRTA GGGGRTARDRSRPLGPAMAGAWLRWGLLLWAGLLASSAHGRLRRITYVVHPGPGLAAGALPLSGPPRSRTFNVALNARYSRSSAAAGAPS RASPGVPSERTRRTSKPGGAALQGLRPPPPPPPEPARPAVPGGQLHPNPGGHPAAAPFTKQGRQVVRSKVPQETQSGGGSRLQVHQKQQL QGVNVCGGRCCHGWSKAPGSQRCTKPSCVPPCQNGGMCLRPQLCVCKPGTKGKACETIAAQDTSSPVFGGQSPGAASSWGPPEQAAKHTS SKKADTLPRVSPVAQMTLTLKPKPSVGLPQQIHSQVTPLSSQSVVIHHGQTQEYVLKPKYFPAQKGISGEQSTEGSFPLRYVQDQVAAPF QLSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRVVICHLPCMNGGQCSSRDKCQCPPNFTGKLCQIP VHGASVPKLYQHSQQPGKALGTHVIHSTHTLPLTVTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGPTGQKTKEAQPGQSQVSY QGLPVQKTQTIHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQKCPKKPSYHGYNQMMECL PGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRCTCKIGFGPDPTFSSCVPDPPVISEEKGPCYRLVSSGRQCMHPLSVHLTKQLCC CSVGKAWGPHCEKCPLPGTAAFKEICPGGMGYTVSGVHRRRPIHHHVGKGPVFVKPKNTQPVAKSTHPPPLPAKEEPVEALTFSREHGPG VAEPEVATAPPEKEIPSLDQEKTKLEPGQPQLSPGISTIHLHPQFPVVIEKTSPPVPVEVAPEASTSSASQVIAPTQVTEINECTVNPDI CGAGHCINLPVRYTCICYEGYRFSEQQRKCVDIDECTQVQHLCSQGRCENTEGSFLCICPAGFMASEEGTNCIDVDECLRPDVCGEGHCV NTVGAFRCEYCDSGYRMTQRGRCEDIDECLNPSTCPDEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLEPNVCANGDCSNLEGSYMCS CHKGYTRTPDHKHCRDIDECQQGNLCVNGQCKNTEGSFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAHGQCRNTEGSFQCVCDQGYRAS GLGDHCEDINECLEDKSVCQRGDCINTAGSYDCTCPDGFQLDDNKTCQDINECEHPGLCGPQGECLNTEGSFHCVCQQGFSISADGRTCE VSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQ LIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQAKFHIMFLFFAAAMFSV SLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFPTCLVNQDPEQASTPAGLNS -------------------------------------------------------------- >50278_50278_7_LTBP1-ZDHHC2_LTBP1_chr2_33540336_ENST00000407925_ZDHHC2_chr8_17042298_ENST00000262096_length(amino acids)=1241AA_BP=917 MDTKLMCLLFFFSLPPLLVSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRVVICHLPCMNGGQCSSR DKCQCPPNFTGKLCQIPVHGASVPKLYQHSQQPGKALGTHVIHSTHTLPLTVTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGP TGQKTKEAQPGQSQVSYQGLPVQKTQTIHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQK CPKKPSYHGYNQMMECLPGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRCTCKIGFGPDPTFSSCVPDPPVISEEKGPCYRLVSSG RQCMHPLSVHLTKQLCCCSVGKAWGPHCEKCPLPGTAAFKEICPGGMGYTVSGVHRRRPIHHHVGKGPVFVKPKNTQPVAKSTHPPPLPA KEEPVEALTFSREHGPGVAEPEVATAPPEKEIPSLDQEKTKLEPGQPQLSPGISTIHLHPQFPVVIEKTSPPVPVEVAPEASTSSASQVI APTQVTEINECTVNPDICGAGHCINLPVRYTCICYEGYRFSEQQRKCVDIDECTQVQHLCSQGRCENTEGSFLCICPAGFMASEEGTNCI DVDECLRPDVCGEGHCVNTVGAFRCEYCDSGYRMTQRGRCEDIDECLNPSTCPDEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLEPN VCANGDCSNLEGSYMCSCHKGYTRTPDHKHCRDIDECQQGNLCVNGQCKNTEGSFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAHGQCR NTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTAGSYDCTCPDGFQLDDNKTCQDINECEHPGLCGPQGECLNTEGSFH CVCQQGFSISADGRTCEVSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDLP IYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQ AKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFPTC -------------------------------------------------------------- >50278_50278_8_LTBP1-ZDHHC2_LTBP1_chr2_33540336_ENST00000418533_ZDHHC2_chr8_17042298_ENST00000262096_length(amino acids)=1241AA_BP=917 MDTKLMCLLFFFSLPPLLVSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRVVICHLPCMNGGQCSSR DKCQCPPNFTGKLCQIPVHGASVPKLYQHSQQPGKALGTHVIHSTHTLPLTVTSQQGVKVKFPPNIVNIHVKHPPEASVQIHQVSRIDGP TGQKTKEAQPGQSQVSYQGLPVQKTQTIHSTYSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKCQK CPKKPSYHGYNQMMECLPGYKRVNNTFCQDINECQLQGVCPNGECLNTMGSYRCTCKIGFGPDPTFSSCVPDPPVISEEKGPCYRLVSSG RQCMHPLSVHLTKQLCCCSVGKAWGPHCEKCPLPGTAAFKEICPGGMGYTVSGVHRRRPIHHHVGKGPVFVKPKNTQPVAKSTHPPPLPA KEEPVEALTFSREHGPGVAEPEVATAPPEKEIPSLDQEKTKLEPGQPQLSPGISTIHLHPQFPVVIEKTSPPVPVEVAPEASTSSASQVI APTQVTEINECTVNPDICGAGHCINLPVRYTCICYEGYRFSEQQRKCVDIDECTQVQHLCSQGRCENTEGSFLCICPAGFMASEEGTNCI DVDECLRPDVCGEGHCVNTVGAFRCEYCDSGYRMTQRGRCEDIDECLNPSTCPDEQCVNSPGSYQCVPCTEGFRGWNGQCLDVDECLEPN VCANGDCSNLEGSYMCSCHKGYTRTPDHKHCRDIDECQQGNLCVNGQCKNTEGSFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAHGQCR NTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTAGSYDCTCPDGFQLDDNKTCQDINECEHPGLCGPQGECLNTEGSFH CVCQQGFSISADGRTCEVSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDLP IYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLPDTQ AKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFPTC -------------------------------------------------------------- |
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Fusion Protein Functional Features |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:17014362/chr8:33572434) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| LTBP1 | . |
| FUNCTION: Key regulator of transforming growth factor beta (TGFB1, TGFB2 and TGFB3) that controls TGF-beta activation by maintaining it in a latent state during storage in extracellular space (PubMed:2022183, PubMed:8617200, PubMed:8939931). Associates specifically via disulfide bonds with the Latency-associated peptide (LAP), which is the regulatory chain of TGF-beta, and regulates integrin-dependent activation of TGF-beta (PubMed:8617200, PubMed:8939931, PubMed:15184403). Outcompeted by LRRC32/GARP for binding to LAP regulatory chain of TGF-beta (PubMed:22278742). {ECO:0000269|PubMed:15184403, ECO:0000269|PubMed:2022183, ECO:0000269|PubMed:22278742, ECO:0000269|PubMed:8617200, ECO:0000269|PubMed:8939931}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 100_130 | 1244.3333333333333 | 1723.0 | Compositional bias | Note=Pro-rich |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 100_130 | 918.3333333333334 | 1397.0 | Compositional bias | Note=Pro-rich |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 100_130 | 864.3333333333334 | 1343.0 | Compositional bias | Note=Pro-rich |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 100_130 | 1243.3333333333333 | 1722.0 | Compositional bias | Note=Pro-rich |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 100_130 | 917.3333333333334 | 1396.0 | Compositional bias | Note=Pro-rich |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1038_1078 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 8%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1079_1119 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 9%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1120_1160 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 10%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1161_1201 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 11%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1202_1243 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 12%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 187_219 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 399_431 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 557_609 | 1244.3333333333333 | 1723.0 | Domain | TB 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 626_663 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 3%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 677_729 | 1244.3333333333333 | 1723.0 | Domain | TB 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 873_910 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 4%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 915_956 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 5%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 957_997 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 6%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 998_1037 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 7%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 187_219 | 918.3333333333334 | 1397.0 | Domain | EGF-like 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 399_431 | 918.3333333333334 | 1397.0 | Domain | EGF-like 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 557_609 | 918.3333333333334 | 1397.0 | Domain | TB 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 626_663 | 918.3333333333334 | 1397.0 | Domain | EGF-like 3%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 677_729 | 918.3333333333334 | 1397.0 | Domain | TB 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 873_910 | 918.3333333333334 | 1397.0 | Domain | EGF-like 4%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 187_219 | 864.3333333333334 | 1343.0 | Domain | EGF-like 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 399_431 | 864.3333333333334 | 1343.0 | Domain | EGF-like 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 557_609 | 864.3333333333334 | 1343.0 | Domain | TB 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 626_663 | 864.3333333333334 | 1343.0 | Domain | EGF-like 3%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 677_729 | 864.3333333333334 | 1343.0 | Domain | TB 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1038_1078 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 8%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1079_1119 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 9%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1120_1160 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 10%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1161_1201 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 11%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1202_1243 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 12%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 187_219 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 399_431 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 557_609 | 1243.3333333333333 | 1722.0 | Domain | TB 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 626_663 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 3%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 677_729 | 1243.3333333333333 | 1722.0 | Domain | TB 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 873_910 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 4%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 915_956 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 5%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 957_997 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 6%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 998_1037 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 7%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 187_219 | 917.3333333333334 | 1396.0 | Domain | EGF-like 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 399_431 | 917.3333333333334 | 1396.0 | Domain | EGF-like 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 557_609 | 917.3333333333334 | 1396.0 | Domain | TB 1 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 626_663 | 917.3333333333334 | 1396.0 | Domain | EGF-like 3%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 677_729 | 917.3333333333334 | 1396.0 | Domain | TB 2 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 873_910 | 917.3333333333334 | 1396.0 | Domain | EGF-like 4%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1174_1176 | 1244.3333333333333 | 1723.0 | Motif | Cell attachment site |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1174_1176 | 1243.3333333333333 | 1722.0 | Motif | Cell attachment site |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 127_177 | 43.333333333333336 | 1607.6666666666667 | Domain | DHHC | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 335_336 | 43.333333333333336 | 1607.6666666666667 | Motif | Non-canonical dileucine endocytic signal | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 358_361 | 43.333333333333336 | 1607.6666666666667 | Motif | NPxY-like endocytic signal | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 299_367 | 43.333333333333336 | 1607.6666666666667 | Region | Mediates localization to plasma membrane and recycling endosomes | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 192_208 | 43.333333333333336 | 1607.6666666666667 | Topological domain | Lumenal | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 230_367 | 43.333333333333336 | 1607.6666666666667 | Topological domain | Cytoplasmic | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 76_170 | 43.333333333333336 | 1607.6666666666667 | Topological domain | Cytoplasmic | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 171_191 | 43.333333333333336 | 1607.6666666666667 | Transmembrane | Helical | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 209_229 | 43.333333333333336 | 1607.6666666666667 | Transmembrane | Helical | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 55_75 | 43.333333333333336 | 1607.6666666666667 | Transmembrane | Helical |
| - Not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1244_1281 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 13%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1286_1328 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 14%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1347_1401 | 1244.3333333333333 | 1723.0 | Domain | TB 3 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1424_1466 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 15%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1467_1503 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 16%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1524_1577 | 1244.3333333333333 | 1723.0 | Domain | TB 4 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1621_1657 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 17 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1662_1706 | 1244.3333333333333 | 1723.0 | Domain | EGF-like 18%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1038_1078 | 918.3333333333334 | 1397.0 | Domain | EGF-like 8%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1079_1119 | 918.3333333333334 | 1397.0 | Domain | EGF-like 9%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1120_1160 | 918.3333333333334 | 1397.0 | Domain | EGF-like 10%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1161_1201 | 918.3333333333334 | 1397.0 | Domain | EGF-like 11%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1202_1243 | 918.3333333333334 | 1397.0 | Domain | EGF-like 12%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1244_1281 | 918.3333333333334 | 1397.0 | Domain | EGF-like 13%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1286_1328 | 918.3333333333334 | 1397.0 | Domain | EGF-like 14%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1347_1401 | 918.3333333333334 | 1397.0 | Domain | TB 3 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1424_1466 | 918.3333333333334 | 1397.0 | Domain | EGF-like 15%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1467_1503 | 918.3333333333334 | 1397.0 | Domain | EGF-like 16%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1524_1577 | 918.3333333333334 | 1397.0 | Domain | TB 4 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1621_1657 | 918.3333333333334 | 1397.0 | Domain | EGF-like 17 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1662_1706 | 918.3333333333334 | 1397.0 | Domain | EGF-like 18%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 915_956 | 918.3333333333334 | 1397.0 | Domain | EGF-like 5%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 957_997 | 918.3333333333334 | 1397.0 | Domain | EGF-like 6%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 998_1037 | 918.3333333333334 | 1397.0 | Domain | EGF-like 7%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1038_1078 | 864.3333333333334 | 1343.0 | Domain | EGF-like 8%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1079_1119 | 864.3333333333334 | 1343.0 | Domain | EGF-like 9%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1120_1160 | 864.3333333333334 | 1343.0 | Domain | EGF-like 10%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1161_1201 | 864.3333333333334 | 1343.0 | Domain | EGF-like 11%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1202_1243 | 864.3333333333334 | 1343.0 | Domain | EGF-like 12%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1244_1281 | 864.3333333333334 | 1343.0 | Domain | EGF-like 13%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1286_1328 | 864.3333333333334 | 1343.0 | Domain | EGF-like 14%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1347_1401 | 864.3333333333334 | 1343.0 | Domain | TB 3 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1424_1466 | 864.3333333333334 | 1343.0 | Domain | EGF-like 15%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1467_1503 | 864.3333333333334 | 1343.0 | Domain | EGF-like 16%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1524_1577 | 864.3333333333334 | 1343.0 | Domain | TB 4 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1621_1657 | 864.3333333333334 | 1343.0 | Domain | EGF-like 17 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1662_1706 | 864.3333333333334 | 1343.0 | Domain | EGF-like 18%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 873_910 | 864.3333333333334 | 1343.0 | Domain | EGF-like 4%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 915_956 | 864.3333333333334 | 1343.0 | Domain | EGF-like 5%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 957_997 | 864.3333333333334 | 1343.0 | Domain | EGF-like 6%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 998_1037 | 864.3333333333334 | 1343.0 | Domain | EGF-like 7%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1244_1281 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 13%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1286_1328 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 14%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1347_1401 | 1243.3333333333333 | 1722.0 | Domain | TB 3 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1424_1466 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 15%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1467_1503 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 16%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1524_1577 | 1243.3333333333333 | 1722.0 | Domain | TB 4 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1621_1657 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 17 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1662_1706 | 1243.3333333333333 | 1722.0 | Domain | EGF-like 18%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1038_1078 | 917.3333333333334 | 1396.0 | Domain | EGF-like 8%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1079_1119 | 917.3333333333334 | 1396.0 | Domain | EGF-like 9%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1120_1160 | 917.3333333333334 | 1396.0 | Domain | EGF-like 10%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1161_1201 | 917.3333333333334 | 1396.0 | Domain | EGF-like 11%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1202_1243 | 917.3333333333334 | 1396.0 | Domain | EGF-like 12%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1244_1281 | 917.3333333333334 | 1396.0 | Domain | EGF-like 13%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1286_1328 | 917.3333333333334 | 1396.0 | Domain | EGF-like 14%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1347_1401 | 917.3333333333334 | 1396.0 | Domain | TB 3 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1424_1466 | 917.3333333333334 | 1396.0 | Domain | EGF-like 15%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1467_1503 | 917.3333333333334 | 1396.0 | Domain | EGF-like 16%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1524_1577 | 917.3333333333334 | 1396.0 | Domain | TB 4 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1621_1657 | 917.3333333333334 | 1396.0 | Domain | EGF-like 17 |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1662_1706 | 917.3333333333334 | 1396.0 | Domain | EGF-like 18%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 915_956 | 917.3333333333334 | 1396.0 | Domain | EGF-like 5%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 957_997 | 917.3333333333334 | 1396.0 | Domain | EGF-like 6%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 998_1037 | 917.3333333333334 | 1396.0 | Domain | EGF-like 7%3B calcium-binding |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1174_1176 | 918.3333333333334 | 1397.0 | Motif | Cell attachment site |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1174_1176 | 864.3333333333334 | 1343.0 | Motif | Cell attachment site |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1174_1176 | 917.3333333333334 | 1396.0 | Motif | Cell attachment site |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1344_1411 | 1244.3333333333333 | 1723.0 | Region | 8-Cys3 region |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000354476 | + | 24 | 34 | 1507_1721 | 1244.3333333333333 | 1723.0 | Region | C-terminal domain |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1344_1411 | 918.3333333333334 | 1397.0 | Region | 8-Cys3 region |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000390003 | + | 20 | 30 | 1507_1721 | 918.3333333333334 | 1397.0 | Region | C-terminal domain |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1344_1411 | 864.3333333333334 | 1343.0 | Region | 8-Cys3 region |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404525 | + | 20 | 30 | 1507_1721 | 864.3333333333334 | 1343.0 | Region | C-terminal domain |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1344_1411 | 1243.3333333333333 | 1722.0 | Region | 8-Cys3 region |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000404816 | + | 24 | 34 | 1507_1721 | 1243.3333333333333 | 1722.0 | Region | C-terminal domain |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1344_1411 | 917.3333333333334 | 1396.0 | Region | 8-Cys3 region |
| Hgene | LTBP1 | chr2:33540336 | chr8:17042298 | ENST00000407925 | + | 20 | 30 | 1507_1721 | 917.3333333333334 | 1396.0 | Region | C-terminal domain |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 1_16 | 43.333333333333336 | 1607.6666666666667 | Topological domain | Cytoplasmic | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 38_54 | 43.333333333333336 | 1607.6666666666667 | Topological domain | Lumenal | |
| Tgene | ZDHHC2 | chr2:33540336 | chr8:17042298 | ENST00000262096 | 0 | 13 | 17_37 | 43.333333333333336 | 1607.6666666666667 | Transmembrane | Helical |
Top |
Fusion Protein-Protein Interaction |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
| Gene | PPI interactors |
| Protein-protein interactors based on sequence similarity (STRING) |
| Gene | STRING network |
| LTBP1 | |
| ZDHHC2 |
| - Retained interactions in fusion protein (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost interactions due to fusion (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs to LTBP1-ZDHHC2 |
| Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Drug | Source | PMID |
Top |
Related Diseases to LTBP1-ZDHHC2 |
| Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Disease | Source | PMID |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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