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Fusion Protein:MAP3K9-MED6 |
Fusion Protein Summary |
 Fusion gene summary |
| Fusion partner gene information | Fusion gene name: MAP3K9-MED6 | FusionPDB ID: 51361 | FusionGDB2.0 ID: 51361 | Hgene | Tgene | Gene symbol | MAP3K9 | MED6 | Gene ID | 4293 | 10001 |
| Gene name | mitogen-activated protein kinase kinase kinase 9 | mediator complex subunit 6 | |
| Synonyms | MEKK9|MLK1|PRKE1 | ARC33|NY-REN-28 | |
| Cytomap | 14q24.2 | 14q24.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | mitogen-activated protein kinase kinase kinase 9mixed lineage kinase 1 (tyr and ser/thr specificity) | mediator of RNA polymerase II transcription subunit 6CTD-2540L5.5activator-recruited cofactor 33 kDa componentrenal carcinoma antigen NY-REN-28 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | P80192 | O75586 | |
| Ensembl transtripts involved in fusion gene | ENST ids | ENST00000381250, ENST00000553414, ENST00000554146, ENST00000554752, ENST00000555993, | ENST00000556044, ENST00000256379, ENST00000430055, ENST00000440435, ENST00000554963, |
| Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 2 X 2 X 2=8 | 3 X 3 X 3=27 |
| # samples | 2 | 3 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context (manual curation of fusion genes in FusionPDB) | PubMed: MAP3K9 [Title/Abstract] AND MED6 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | MAP3K9(71216650)-MED6(71060095), # samples:2 MED6(71063328)-MAP3K9(71227899), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | MAP3K9-MED6 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. MAP3K9-MED6 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. MAP3K9-MED6 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. MAP3K9-MED6 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. MED6-MAP3K9 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. MED6-MAP3K9 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. MAP3K9-MED6 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. MAP3K9-MED6 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. MAP3K9-MED6 seems lost the major protein functional domain in Hgene partner, which is a kinase due to the frame-shifted ORF. MAP3K9-MED6 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. MAP3K9-MED6 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | MAP3K9 | GO:0006468 | protein phosphorylation | 15610029 |
| Hgene | MAP3K9 | GO:0046777 | protein autophosphorylation | 15610029 |
| Tgene | MED6 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 12037571 |
| Fusion gene breakpoints across MAP3K9 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across MED6 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
| Fusion gene information from FusionGDB2.0. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | ACC | TCGA-OR-A5LG-01A | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - |
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Fusion ORF Analysis |
| Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000554752 | MAP3K9 | chr14 | 71216650 | - | ENST00000554963 | MED6 | chr14 | 71060095 | - | 1845 | 1150 | 0 | 1625 | 541 |
| ENST00000554752 | MAP3K9 | chr14 | 71216650 | - | ENST00000256379 | MED6 | chr14 | 71060095 | - | 2841 | 1150 | 0 | 1616 | 538 |
| ENST00000554752 | MAP3K9 | chr14 | 71216650 | - | ENST00000430055 | MED6 | chr14 | 71060095 | - | 2365 | 1150 | 0 | 1637 | 545 |
| ENST00000554752 | MAP3K9 | chr14 | 71216650 | - | ENST00000440435 | MED6 | chr14 | 71060095 | - | 1789 | 1150 | 0 | 1421 | 473 |
| ENST00000555993 | MAP3K9 | chr14 | 71216650 | - | ENST00000554963 | MED6 | chr14 | 71060095 | - | 2208 | 1513 | 363 | 1988 | 541 |
| ENST00000555993 | MAP3K9 | chr14 | 71216650 | - | ENST00000256379 | MED6 | chr14 | 71060095 | - | 3204 | 1513 | 363 | 1979 | 538 |
| ENST00000555993 | MAP3K9 | chr14 | 71216650 | - | ENST00000430055 | MED6 | chr14 | 71060095 | - | 2728 | 1513 | 363 | 2000 | 545 |
| ENST00000555993 | MAP3K9 | chr14 | 71216650 | - | ENST00000440435 | MED6 | chr14 | 71060095 | - | 2152 | 1513 | 363 | 1784 | 473 |
| ENST00000381250 | MAP3K9 | chr14 | 71216650 | - | ENST00000554963 | MED6 | chr14 | 71060095 | - | 2180 | 1485 | 335 | 1960 | 541 |
| ENST00000381250 | MAP3K9 | chr14 | 71216650 | - | ENST00000256379 | MED6 | chr14 | 71060095 | - | 3176 | 1485 | 335 | 1951 | 538 |
| ENST00000381250 | MAP3K9 | chr14 | 71216650 | - | ENST00000430055 | MED6 | chr14 | 71060095 | - | 2700 | 1485 | 335 | 1972 | 545 |
| ENST00000381250 | MAP3K9 | chr14 | 71216650 | - | ENST00000440435 | MED6 | chr14 | 71060095 | - | 2124 | 1485 | 335 | 1756 | 473 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000554752 | ENST00000554963 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.004836928 | 0.9951631 |
| ENST00000554752 | ENST00000256379 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.000669385 | 0.99933064 |
| ENST00000554752 | ENST00000430055 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.002061575 | 0.99793845 |
| ENST00000554752 | ENST00000440435 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.004164815 | 0.9958352 |
| ENST00000555993 | ENST00000554963 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.006933472 | 0.99306655 |
| ENST00000555993 | ENST00000256379 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.001065981 | 0.998934 |
| ENST00000555993 | ENST00000430055 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.003169492 | 0.9968305 |
| ENST00000555993 | ENST00000440435 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.00515454 | 0.9948455 |
| ENST00000381250 | ENST00000554963 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.007353173 | 0.9926468 |
| ENST00000381250 | ENST00000256379 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.00108825 | 0.99891174 |
| ENST00000381250 | ENST00000430055 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.003241149 | 0.9967589 |
| ENST00000381250 | ENST00000440435 | MAP3K9 | chr14 | 71216650 | - | MED6 | chr14 | 71060095 | - | 0.005409503 | 0.9945905 |
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Fusion Amino Acid Sequences |
| For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >51361_51361_1_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000381250_MED6_chr14_71060095_ENST00000256379_length(amino acids)=538AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKV -------------------------------------------------------------- >51361_51361_2_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000381250_MED6_chr14_71060095_ENST00000430055_length(amino acids)=545AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVSLFSFYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKD HEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPEK -------------------------------------------------------------- >51361_51361_3_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000381250_MED6_chr14_71060095_ENST00000440435_length(amino acids)=473AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQAKA -------------------------------------------------------------- >51361_51361_4_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000381250_MED6_chr14_71060095_ENST00000554963_length(amino acids)=541AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKV RPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPEKRMRLQKA -------------------------------------------------------------- >51361_51361_5_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000554752_MED6_chr14_71060095_ENST00000256379_length(amino acids)=538AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKV -------------------------------------------------------------- >51361_51361_6_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000554752_MED6_chr14_71060095_ENST00000430055_length(amino acids)=545AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVSLFSFYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKD HEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPEK -------------------------------------------------------------- >51361_51361_7_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000554752_MED6_chr14_71060095_ENST00000440435_length(amino acids)=473AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQAKA -------------------------------------------------------------- >51361_51361_8_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000554752_MED6_chr14_71060095_ENST00000554963_length(amino acids)=541AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKV RPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPEKRMRLQKA -------------------------------------------------------------- >51361_51361_9_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000555993_MED6_chr14_71060095_ENST00000256379_length(amino acids)=538AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKV -------------------------------------------------------------- >51361_51361_10_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000555993_MED6_chr14_71060095_ENST00000430055_length(amino acids)=545AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVSLFSFYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKD HEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPEK -------------------------------------------------------------- >51361_51361_11_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000555993_MED6_chr14_71060095_ENST00000440435_length(amino acids)=473AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQAKA -------------------------------------------------------------- >51361_51361_12_MAP3K9-MED6_MAP3K9_chr14_71216650_ENST00000555993_MED6_chr14_71060095_ENST00000554963_length(amino acids)=541AA_BP=0 MEPSRALLGCLASAAAAAPPGEDGAGAGAEEEEEEEEEAAAAVGPGELGCDAPLPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSG DEGWWTGQLNQRVGIFPSNYVTPRSAFSSRCQPGGEDPSCYPPIQLLEIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED ISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG VAMNKLALPIPSTCPEPFAKLMEVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKV RPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPEKRMRLQKA -------------------------------------------------------------- |
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Fusion Protein Functional Features |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr14:71216650/chr14:71060095) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MAP3K9 | MED6 |
| FUNCTION: Serine/threonine kinase which acts as an essential component of the MAP kinase signal transduction pathway. Plays an important role in the cascades of cellular responses evoked by changes in the environment. Once activated, acts as an upstream activator of the MKK/JNK signal transduction cascade through the phosphorylation of MAP2K4/MKK4 and MAP2K7/MKK7 which in turn activate the JNKs. The MKK/JNK signaling pathway regulates stress response via activator protein-1 (JUN) and GATA4 transcription factors. Plays also a role in mitochondrial death signaling pathway, including the release cytochrome c, leading to apoptosis. {ECO:0000269|PubMed:11416147, ECO:0000269|PubMed:15610029}. | FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000269|PubMed:16595664}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 12_42 | 383.3333333333333 | 1105.0 | Compositional bias | Note=Ala-rich |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 30_38 | 383.3333333333333 | 1105.0 | Compositional bias | Note=Poly-Glu |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 12_42 | 383.3333333333333 | 1119.0 | Compositional bias | Note=Ala-rich |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 30_38 | 383.3333333333333 | 1119.0 | Compositional bias | Note=Poly-Glu |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 52_116 | 383.3333333333333 | 1105.0 | Domain | SH3 |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 52_116 | 383.3333333333333 | 1119.0 | Domain | SH3 |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 150_158 | 383.3333333333333 | 1105.0 | Nucleotide binding | ATP |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 150_158 | 383.3333333333333 | 1119.0 | Nucleotide binding | ATP |
| - Not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 1011_1041 | 383.3333333333333 | 1105.0 | Compositional bias | Note=Ser-rich |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 495_509 | 383.3333333333333 | 1105.0 | Compositional bias | Note=Arg/Lys-rich (basic) |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 863_972 | 383.3333333333333 | 1105.0 | Compositional bias | Note=Pro-rich |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 1011_1041 | 383.3333333333333 | 1119.0 | Compositional bias | Note=Ser-rich |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 495_509 | 383.3333333333333 | 1119.0 | Compositional bias | Note=Arg/Lys-rich (basic) |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 863_972 | 383.3333333333333 | 1119.0 | Compositional bias | Note=Pro-rich |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 144_412 | 383.3333333333333 | 1105.0 | Domain | Protein kinase |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 144_412 | 383.3333333333333 | 1119.0 | Domain | Protein kinase |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 430_451 | 383.3333333333333 | 1105.0 | Region | Note=Leucine-zipper 1 |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000554752 | - | 4 | 12 | 465_486 | 383.3333333333333 | 1105.0 | Region | Note=Leucine-zipper 2 |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 430_451 | 383.3333333333333 | 1119.0 | Region | Note=Leucine-zipper 1 |
| Hgene | MAP3K9 | chr14:71216650 | chr14:71060095 | ENST00000555993 | - | 4 | 13 | 465_486 | 383.3333333333333 | 1119.0 | Region | Note=Leucine-zipper 2 |
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Fusion Protein-Protein Interaction |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
| Gene | PPI interactors |
| Protein-protein interactors based on sequence similarity (STRING) |
| Gene | STRING network |
| MAP3K9 | |
| MED6 |
| - Retained interactions in fusion protein (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost interactions due to fusion (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to MAP3K9-MED6 |
| Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Drug | Source | PMID |
Top |
Related Diseases to MAP3K9-MED6 |
| Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Disease | Source | PMID |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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