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Fusion Protein:NOTCH3-ERF |
Fusion Protein Summary |
 Fusion gene summary |
| Fusion partner gene information | Fusion gene name: NOTCH3-ERF | FusionPDB ID: 59783 | FusionGDB2.0 ID: 59783 | Hgene | Tgene | Gene symbol | NOTCH3 | ERF | Gene ID | 4854 | 2107 |
| Gene name | notch receptor 3 | eukaryotic translation termination factor 1 | |
| Synonyms | CADASIL|CADASIL1|CASIL|IMF2|LMNS | D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 | |
| Cytomap | 19p13.12 | 5q31.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | neurogenic locus notch homolog protein 3Notch homolog 3notch 3 | eukaryotic peptide chain release factor subunit 1polypeptide chain release factor 1protein Cl1sup45 (yeast omnipotent suppressor 45) homolog-like 1 | |
| Modification date | 20200329 | 20200329 | |
| UniProtAcc | Q9UM47 | Q4G0M1 | |
| Ensembl transtripts involved in fusion gene | ENST ids | ENST00000263388, | ENST00000440177, ENST00000595941, ENST00000222329, |
| Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 15 X 17 X 11=2805 | 4 X 3 X 3=36 |
| # samples | 18 | 4 | |
| ** MAII score | log2(18/2805*10)=-3.96193195916648 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context (manual curation of fusion genes in FusionPDB) | PubMed: NOTCH3 [Title/Abstract] AND ERF [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | NOTCH3(15303187)-ERF(42754717), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | NOTCH3-ERF seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. NOTCH3-ERF seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. NOTCH3-ERF seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. NOTCH3-ERF seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | ERF | GO:0006415 | translational termination | 7990965 |
| Tgene | ERF | GO:0006479 | protein methylation | 18539146 |
| Fusion gene breakpoints across NOTCH3 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across ERF (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
| Fusion gene information from FusionGDB2.0. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | OV | TCGA-23-1109 | NOTCH3 | chr19 | 15303187 | - | ERF | chr19 | 42754717 | - |
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Fusion ORF Analysis |
| Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000263388 | NOTCH3 | chr19 | 15303187 | - | ENST00000222329 | ERF | chr19 | 42754717 | - | 2934 | 416 | 76 | 2040 | 654 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000263388 | ENST00000222329 | NOTCH3 | chr19 | 15303187 | - | ERF | chr19 | 42754717 | - | 0.07043492 | 0.9295651 |
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Fusion Amino Acid Sequences |
| For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >59783_59783_1_NOTCH3-ERF_NOTCH3_chr19_15303187_ENST00000263388_ERF_chr19_42754717_ENST00000222329_length(amino acids)=654AA_BP=113 MGPGARGRRRRRRPMSPPPPPPPVRALPLLLLLAGPGAAAPPCLDGSPCANGGRCTQLPSREAACLCPPGWVGERCQLEDPCHSGPCAGR GVCQSSVVAGTARFSCRCPRGFRGFAFPDWAYKPESSPGSRQIQLWHFILELLRKEEYQGVIAWQGDYGEFVIKDPDEVARLWGVRKCKP QMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVLVNYPFIDVGLAGGAVPQSAPPVPSGGSHFRFPPSTPSEVLSPTEDPRSPPA CSSSSSSLFSAVVARRLGRGSVSDCSDGTSELEEPLGEDPRARPPGPPDLGAFRGPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLA GPGSLLPPQLSPALPMTPTHLAYTPSPTLSPMYPSGGGGPSGSGGGSHFSFSPEDMKRYLQAHTQSVYNYHLSPRAFLHYPGLVVPQPQR PDKCPLPPMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADKSGGSAGGLAEGAGALAPPPPPPQIKVEPISEGE SEEVEVTDISDEDEEDGEVFKTPRAPPAPPKPEPGEAPGASQCMPLKLRFKRRWSEDCRLEGGGGPAGGFEDEGEDKKVRGEGPGEAGGP -------------------------------------------------------------- |
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Fusion Protein Functional Features |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:15303187/chr19:42754717) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| NOTCH3 | ERF |
| FUNCTION: Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination (PubMed:15350543). Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). {ECO:0000250|UniProtKB:Q9R172, ECO:0000269|PubMed:15350543}. | FUNCTION: Iron-regulatory hormone that acts as an erythroid regulator after hemorrhage: produced by erythroblasts following blood loss and mediates suppression of hepcidin (HAMP) expression in the liver, thereby promoting increased iron absorption and mobilization from stores. Promotes lipid uptake into adipocytes and hepatocytes via transcriptional up-regulation of genes involved in fatty acid uptake. {ECO:0000250|UniProtKB:Q6PGN1}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 40_77 | 113.33333333333333 | 2322.0 | Domain | EGF-like 1 |
| Tgene | ERF | chr19:15303187 | chr19:42754717 | ENST00000222329 | 0 | 4 | 166_171 | 7.333333333333333 | 549.0 | Compositional bias | Note=Poly-Ser | |
| Tgene | ERF | chr19:15303187 | chr19:42754717 | ENST00000222329 | 0 | 4 | 290_293 | 7.333333333333333 | 549.0 | Compositional bias | Note=Poly-Gly | |
| Tgene | ERF | chr19:15303187 | chr19:42754717 | ENST00000222329 | 0 | 4 | 362_373 | 7.333333333333333 | 549.0 | Compositional bias | Note=Poly-Ser | |
| Tgene | ERF | chr19:15303187 | chr19:42754717 | ENST00000222329 | 0 | 4 | 418_423 | 7.333333333333333 | 549.0 | Compositional bias | Note=Poly-Pro | |
| Tgene | ERF | chr19:15303187 | chr19:42754717 | ENST00000222329 | 0 | 4 | 496_499 | 7.333333333333333 | 549.0 | Compositional bias | Note=Poly-Gly | |
| Tgene | ERF | chr19:15303187 | chr19:42754717 | ENST00000222329 | 0 | 4 | 27_107 | 7.333333333333333 | 549.0 | DNA binding | ETS |
| - Not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1000_1034 | 113.33333333333333 | 2322.0 | Domain | EGF-like 26 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1036_1082 | 113.33333333333333 | 2322.0 | Domain | EGF-like 27 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1084_1120 | 113.33333333333333 | 2322.0 | Domain | EGF-like 28 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1122_1158 | 113.33333333333333 | 2322.0 | Domain | EGF-like 29%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1160_1203 | 113.33333333333333 | 2322.0 | Domain | EGF-like 30%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 119_156 | 113.33333333333333 | 2322.0 | Domain | EGF-like 3 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1205_1244 | 113.33333333333333 | 2322.0 | Domain | EGF-like 31 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1246_1287 | 113.33333333333333 | 2322.0 | Domain | EGF-like 32 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1289_1325 | 113.33333333333333 | 2322.0 | Domain | EGF-like 33 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1335_1373 | 113.33333333333333 | 2322.0 | Domain | EGF-like 34 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 158_195 | 113.33333333333333 | 2322.0 | Domain | EGF-like 4%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 197_234 | 113.33333333333333 | 2322.0 | Domain | EGF-like 5 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 236_272 | 113.33333333333333 | 2322.0 | Domain | EGF-like 6%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 274_312 | 113.33333333333333 | 2322.0 | Domain | EGF-like 7 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 314_350 | 113.33333333333333 | 2322.0 | Domain | EGF-like 8%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 351_389 | 113.33333333333333 | 2322.0 | Domain | EGF-like 9 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 391_429 | 113.33333333333333 | 2322.0 | Domain | EGF-like 10%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 431_467 | 113.33333333333333 | 2322.0 | Domain | EGF-like 11%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 469_505 | 113.33333333333333 | 2322.0 | Domain | EGF-like 12%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 507_543 | 113.33333333333333 | 2322.0 | Domain | EGF-like 13%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 545_580 | 113.33333333333333 | 2322.0 | Domain | EGF-like 14%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 582_618 | 113.33333333333333 | 2322.0 | Domain | EGF-like 15%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 620_655 | 113.33333333333333 | 2322.0 | Domain | EGF-like 16%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 657_693 | 113.33333333333333 | 2322.0 | Domain | EGF-like 17%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 695_730 | 113.33333333333333 | 2322.0 | Domain | EGF-like 18 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 734_770 | 113.33333333333333 | 2322.0 | Domain | EGF-like 19 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 771_808 | 113.33333333333333 | 2322.0 | Domain | EGF-like 20 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 78_118 | 113.33333333333333 | 2322.0 | Domain | EGF-like 2 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 810_847 | 113.33333333333333 | 2322.0 | Domain | EGF-like 21%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 849_885 | 113.33333333333333 | 2322.0 | Domain | EGF-like 22%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 887_922 | 113.33333333333333 | 2322.0 | Domain | EGF-like 23%3B calcium-binding |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 924_960 | 113.33333333333333 | 2322.0 | Domain | EGF-like 24 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 962_998 | 113.33333333333333 | 2322.0 | Domain | EGF-like 25 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1387_1427 | 113.33333333333333 | 2322.0 | Repeat | Note=LNR 1 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1428_1458 | 113.33333333333333 | 2322.0 | Repeat | Note=LNR 2 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1467_1505 | 113.33333333333333 | 2322.0 | Repeat | Note=LNR 3 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1838_1867 | 113.33333333333333 | 2322.0 | Repeat | Note=ANK 1 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1871_1901 | 113.33333333333333 | 2322.0 | Repeat | Note=ANK 2 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1905_1934 | 113.33333333333333 | 2322.0 | Repeat | Note=ANK 3 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1938_1967 | 113.33333333333333 | 2322.0 | Repeat | Note=ANK 4 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1971_2000 | 113.33333333333333 | 2322.0 | Repeat | Note=ANK 5 |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1665_2321 | 113.33333333333333 | 2322.0 | Topological domain | Cytoplasmic |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 40_1643 | 113.33333333333333 | 2322.0 | Topological domain | Extracellular |
| Hgene | NOTCH3 | chr19:15303187 | chr19:42754717 | ENST00000263388 | - | 3 | 33 | 1644_1664 | 113.33333333333333 | 2322.0 | Transmembrane | Helical |
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Fusion Protein-Protein Interaction |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
| Gene | PPI interactors |
| Protein-protein interactors based on sequence similarity (STRING) |
| Gene | STRING network |
| NOTCH3 | |
| ERF |
| - Retained interactions in fusion protein (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost interactions due to fusion (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to NOTCH3-ERF |
| Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to NOTCH3-ERF |
| Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Disease | Source | PMID |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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