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Fusion Protein:NPEPPS-CREB3L1 |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: NPEPPS-CREB3L1 | FusionPDB ID: 59877 | FusionGDB2.0 ID: 59877 | Hgene | Tgene | Gene symbol | NPEPPS | CREB3L1 | Gene ID | 9520 | 90993 |
Gene name | aminopeptidase puromycin sensitive | cAMP responsive element binding protein 3 like 1 | |
Synonyms | AAP-S|MP100|PSA | OASIS|OI16 | |
Cytomap | 17q21.32 | 11p11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | puromycin-sensitive aminopeptidasecytosol alanyl aminopeptidasemetalloproteinase MP100 | cyclic AMP-responsive element-binding protein 3-like protein 1BBF-2 homologcAMP-responsive element-binding protein 3-like protein 1old astrocyte specifically-induced substance | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | P55786 | Q96BA8 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000525037, ENST00000322157, ENST00000530173, ENST00000544660, | ENST00000288400, ENST00000529193, ENST00000534616, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 18 X 9 X 9=1458 | 10 X 10 X 4=400 |
# samples | 19 | 8 | |
** MAII score | log2(19/1458*10)=-2.93991939599599 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/400*10)=-2.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: NPEPPS [Title/Abstract] AND CREB3L1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | NPEPPS(45623359)-CREB3L1(46341815), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | NPEPPS-CREB3L1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. NPEPPS-CREB3L1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. NPEPPS-CREB3L1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. NPEPPS-CREB3L1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | NPEPPS | GO:0071456 | cellular response to hypoxia | 21056661 |
Tgene | CREB3L1 | GO:0010629 | negative regulation of gene expression | 27121396 |
Tgene | CREB3L1 | GO:0032967 | positive regulation of collagen biosynthetic process | 25310401 |
Tgene | CREB3L1 | GO:0040037 | negative regulation of fibroblast growth factor receptor signaling pathway | 27121396 |
Tgene | CREB3L1 | GO:0045892 | negative regulation of transcription, DNA-templated | 27121396 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | UCS | TCGA-NA-A5I1-01A | NPEPPS | chr17 | 45623359 | + | CREB3L1 | chr11 | 46341815 | + |
ChimerDB4 | UCS | TCGA-NA-A5I1 | NPEPPS | chr17 | 45623359 | + | CREB3L1 | chr11 | 46341815 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000530173 | NPEPPS | chr17 | 45623359 | + | ENST00000529193 | CREB3L1 | chr11 | 46341815 | + | 1336 | 358 | 30 | 659 | 209 |
ENST00000530173 | NPEPPS | chr17 | 45623359 | + | ENST00000288400 | CREB3L1 | chr11 | 46341815 | + | 1334 | 358 | 30 | 659 | 209 |
ENST00000322157 | NPEPPS | chr17 | 45623359 | + | ENST00000529193 | CREB3L1 | chr11 | 46341815 | + | 1555 | 577 | 66 | 878 | 270 |
ENST00000322157 | NPEPPS | chr17 | 45623359 | + | ENST00000288400 | CREB3L1 | chr11 | 46341815 | + | 1553 | 577 | 66 | 878 | 270 |
ENST00000544660 | NPEPPS | chr17 | 45623359 | + | ENST00000529193 | CREB3L1 | chr11 | 46341815 | + | 1292 | 314 | 13 | 615 | 200 |
ENST00000544660 | NPEPPS | chr17 | 45623359 | + | ENST00000288400 | CREB3L1 | chr11 | 46341815 | + | 1290 | 314 | 13 | 615 | 200 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000530173 | ENST00000529193 | NPEPPS | chr17 | 45623359 | + | CREB3L1 | chr11 | 46341815 | + | 0.025895497 | 0.97410446 |
ENST00000530173 | ENST00000288400 | NPEPPS | chr17 | 45623359 | + | CREB3L1 | chr11 | 46341815 | + | 0.026064781 | 0.9739352 |
ENST00000322157 | ENST00000529193 | NPEPPS | chr17 | 45623359 | + | CREB3L1 | chr11 | 46341815 | + | 0.044976186 | 0.95502377 |
ENST00000322157 | ENST00000288400 | NPEPPS | chr17 | 45623359 | + | CREB3L1 | chr11 | 46341815 | + | 0.046533797 | 0.9534662 |
ENST00000544660 | ENST00000529193 | NPEPPS | chr17 | 45623359 | + | CREB3L1 | chr11 | 46341815 | + | 0.009365995 | 0.9906341 |
ENST00000544660 | ENST00000288400 | NPEPPS | chr17 | 45623359 | + | CREB3L1 | chr11 | 46341815 | + | 0.009596954 | 0.99040306 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >59877_59877_1_NPEPPS-CREB3L1_NPEPPS_chr17_45623359_ENST00000322157_CREB3L1_chr11_46341815_ENST00000288400_length(amino acids)=270AA_BP=170 MRALLPFPPLRPLPRRQPARQSARTASFPAPSAPAGSLPRPPGSPGRSPPAVARARWMWLAAAAPSLARRLLFLGPPPPPLLLLVFSRSS RRRLHSLGLAAMPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEGDEVPSRSLLFYD DGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDGGNGTSPDFSHSKEWFHDRDLGPNTTIKLS -------------------------------------------------------------- >59877_59877_2_NPEPPS-CREB3L1_NPEPPS_chr17_45623359_ENST00000322157_CREB3L1_chr11_46341815_ENST00000529193_length(amino acids)=270AA_BP=170 MRALLPFPPLRPLPRRQPARQSARTASFPAPSAPAGSLPRPPGSPGRSPPAVARARWMWLAAAAPSLARRLLFLGPPPPPLLLLVFSRSS RRRLHSLGLAAMPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEGDEVPSRSLLFYD DGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDGGNGTSPDFSHSKEWFHDRDLGPNTTIKLS -------------------------------------------------------------- >59877_59877_3_NPEPPS-CREB3L1_NPEPPS_chr17_45623359_ENST00000530173_CREB3L1_chr11_46341815_ENST00000288400_length(amino acids)=209AA_BP=109 MASFSMDCSPSFCVPGLWNPFIIFRSRSSRRRLHSLGLAAMPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIV MNCADIDIITASYAPEGDEVPSRSLLFYDDGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDG -------------------------------------------------------------- >59877_59877_4_NPEPPS-CREB3L1_NPEPPS_chr17_45623359_ENST00000530173_CREB3L1_chr11_46341815_ENST00000529193_length(amino acids)=209AA_BP=109 MASFSMDCSPSFCVPGLWNPFIIFRSRSSRRRLHSLGLAAMPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIV MNCADIDIITASYAPEGDEVPSRSLLFYDDGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDG -------------------------------------------------------------- >59877_59877_5_NPEPPS-CREB3L1_NPEPPS_chr17_45623359_ENST00000544660_CREB3L1_chr11_46341815_ENST00000288400_length(amino acids)=200AA_BP=100 MLFLGPPPPPLLLLVFSRSSRRRLHSLGLAAMPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDII TASYAPEGDEVPSRSLLFYDDGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDGGNGTSPDFS -------------------------------------------------------------- >59877_59877_6_NPEPPS-CREB3L1_NPEPPS_chr17_45623359_ENST00000544660_CREB3L1_chr11_46341815_ENST00000529193_length(amino acids)=200AA_BP=100 MLFLGPPPPPLLLLVFSRSSRRRLHSLGLAAMPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDII TASYAPEGDEVPSRSLLFYDDGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDGGNGTSPDFS -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:45623359/chr11:46341815) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
NPEPPS | CREB3L1 |
FUNCTION: Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic events essential for cell growth and viability. May act as regulator of neuropeptide activity. Plays a role in the antigen-processing pathway for MHC class I molecules. Involved in the N-terminal trimming of cytotoxic T-cell epitope precursors. Digests the poly-Q peptides found in many cellular proteins. Digests tau from normal brain more efficiently than tau from Alzheimer disease brain. {ECO:0000269|PubMed:10978616, ECO:0000269|PubMed:11062501, ECO:0000269|PubMed:17154549, ECO:0000269|PubMed:17318184, ECO:0000269|PubMed:19917696}. | FUNCTION: Transcription factor involved in unfolded protein response (UPR). Binds the DNA consensus sequence 5'-GTGXGCXGC-3' (PubMed:21767813). In the absence of endoplasmic reticulum (ER) stress, inserted into ER membranes, with N-terminal DNA-binding and transcription activation domains oriented toward the cytosolic face of the membrane. In response to ER stress, transported to the Golgi, where it is cleaved in a site-specific manner by resident proteases S1P/MBTPS1 and S2P/MBTPS2. The released N-terminal cytosolic domain is translocated to the nucleus to effect transcription of specific target genes. Plays a critical role in bone formation through the transcription of COL1A1, and possibly COL1A2, and the secretion of bone matrix proteins. Directly binds to the UPR element (UPRE)-like sequence in an osteoblast-specific COL1A1 promoter region and induces its transcription. Does not regulate COL1A1 in other tissues, such as skin (By similarity). Required to protect astrocytes from ER stress-induced cell death. In astrocytes, binds to the cAMP response element (CRE) of the BiP/HSPA5 promoter and participate in its transcriptional activation (By similarity). Required for TGFB1 to activate genes involved in the assembly of collagen extracellular matrix (PubMed:25310401). {ECO:0000250|UniProtKB:Q9Z125, ECO:0000269|PubMed:12054625, ECO:0000269|PubMed:21767813, ECO:0000269|PubMed:25310401}.; FUNCTION: (Microbial infection) May play a role in limiting virus spread by inhibiting proliferation of virus-infected cells. Upon infection with diverse DNA and RNA viruses, inhibits cell-cycle progression by binding to promoters and activating transcription of genes encoding cell-cycle inhibitors, such as p21/CDKN1A (PubMed:21767813). {ECO:0000269|PubMed:21767813}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 423_426 | 419.3333333333333 | 520.0 | Motif | S1P recognition | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 423_426 | 419.3333333333333 | 520.0 | Motif | S1P recognition |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | NPEPPS | chr17:45623359 | chr11:46341815 | ENST00000322157 | + | 2 | 23 | 726_730 | 113.33333333333333 | 920.0 | Motif | Nuclear localization signal |
Hgene | NPEPPS | chr17:45623359 | chr11:46341815 | ENST00000322157 | + | 2 | 23 | 316_320 | 113.33333333333333 | 920.0 | Region | Substrate binding |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 146_154 | 419.3333333333333 | 520.0 | Compositional bias | Note=Poly-Ala | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 146_154 | 419.3333333333333 | 520.0 | Compositional bias | Note=Poly-Ala | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 290_353 | 419.3333333333333 | 520.0 | Domain | bZIP | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 290_353 | 419.3333333333333 | 520.0 | Domain | bZIP | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 392_395 | 419.3333333333333 | 520.0 | Motif | S2P recognition | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 392_395 | 419.3333333333333 | 520.0 | Motif | S2P recognition | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 1_60 | 419.3333333333333 | 520.0 | Region | Note=Required for transcriptional activation | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 292_321 | 419.3333333333333 | 520.0 | Region | Basic motif | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 332_353 | 419.3333333333333 | 520.0 | Region | Leucine-zipper | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 1_60 | 419.3333333333333 | 520.0 | Region | Note=Required for transcriptional activation | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 292_321 | 419.3333333333333 | 520.0 | Region | Basic motif | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 332_353 | 419.3333333333333 | 520.0 | Region | Leucine-zipper | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 1_374 | 419.3333333333333 | 520.0 | Topological domain | Cytoplasmic | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 396_519 | 419.3333333333333 | 520.0 | Topological domain | Lumenal | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 1_374 | 419.3333333333333 | 520.0 | Topological domain | Cytoplasmic | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 396_519 | 419.3333333333333 | 520.0 | Topological domain | Lumenal | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000288400 | 9 | 12 | 375_395 | 419.3333333333333 | 520.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein | |
Tgene | CREB3L1 | chr17:45623359 | chr11:46341815 | ENST00000529193 | 9 | 12 | 375_395 | 419.3333333333333 | 520.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
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Fusion Protein Structures |
![]() * Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format. |
Fusion protein PDB link (fusion AA seq ID in FusionPDB) | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | AA seq | Len(AA seq) |
PDB file >>>460_NPEPPS_45623359_CREB3L1_46341815_ranked_0.pdb | NPEPPS | 45623359 | 45623359 | ENST00000288400 | CREB3L1 | chr11 | 46341815 | + | MRALLPFPPLRPLPRRQPARQSARTASFPAPSAPAGSLPRPPGSPGRSPPAVARARWMWLAAAAPSLARRLLFLGPPPPPLLLLVFSRSS RRRLHSLGLAAMPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEGDEVPSRSLLFYD DGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDGGNGTSPDFSHSKEWFHDRDLGPNTTIKLS | 270 |
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pLDDT score distribution |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
NPEPPS_pLDDT.png![]() |
CREB3L1_pLDDT.png![]() |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
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Ramachandran Plot of Fusion Protein Structure |
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Fusion AA seq ID in FusionPDB and their Ramachandran plots |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
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Gene | STRING network |
NPEPPS | |
CREB3L1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to NPEPPS-CREB3L1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to NPEPPS-CREB3L1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |