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Fusion Protein:PNPT1-FBXO11 |
Fusion Protein Summary |
 Fusion gene summary |
| Fusion partner gene information | Fusion gene name: PNPT1-FBXO11 | FusionPDB ID: 66797 | FusionGDB2.0 ID: 66797 | Hgene | Tgene | Gene symbol | PNPT1 | FBXO11 | Gene ID | 87178 | 80204 |
| Gene name | polyribonucleotide nucleotidyltransferase 1 | F-box protein 11 | |
| Synonyms | COXPD13|DFNB70|OLD35|PNPASE|old-35 | FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 | |
| Cytomap | 2p16.1 | 2p16.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | polyribonucleotide nucleotidyltransferase 1, mitochondrial3'-5' RNA exonuclease OLD35PNPase 1PNPase old-35polynucleotide phosphorylase 1polynucleotide phosphorylase-like protein | F-box only protein 11protein arginine N-methyltransferase 9ubiquitin protein ligase E3 component n-recognin 6vitiligo-associated protein 1vitiligo-associated protein VIT-1 | |
| Modification date | 20200313 | 20200327 | |
| UniProtAcc | . | Q86XK2 | |
| Ensembl transtripts involved in fusion gene | ENST ids | ENST00000447944, | ENST00000434523, ENST00000378314, ENST00000405808, ENST00000480038, ENST00000316377, ENST00000402508, ENST00000403359, |
| Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 3 X 4 X 2=24 | 8 X 12 X 6=576 |
| # samples | 4 | 15 | |
| ** MAII score | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(15/576*10)=-1.94110631094643 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context (manual curation of fusion genes in FusionPDB) | PubMed: PNPT1 [Title/Abstract] AND FBXO11 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | PNPT1(55910919)-FBXO11(48050499), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | PNPT1-FBXO11 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PNPT1-FBXO11 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PNPT1-FBXO11 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PNPT1-FBXO11 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | PNPT1 | GO:0000957 | mitochondrial RNA catabolic process | 18501193 |
| Hgene | PNPT1 | GO:0000958 | mitochondrial mRNA catabolic process | 20691904 |
| Hgene | PNPT1 | GO:0000962 | positive regulation of mitochondrial RNA catabolic process | 19509288|29967381 |
| Hgene | PNPT1 | GO:0006401 | RNA catabolic process | 18083836 |
| Hgene | PNPT1 | GO:0006402 | mRNA catabolic process | 12721301|16055741 |
| Hgene | PNPT1 | GO:0034599 | cellular response to oxidative stress | 18501193 |
| Hgene | PNPT1 | GO:0035458 | cellular response to interferon-beta | 16410805 |
| Hgene | PNPT1 | GO:0035927 | RNA import into mitochondrion | 20691904 |
| Hgene | PNPT1 | GO:0035928 | rRNA import into mitochondrion | 20691904 |
| Hgene | PNPT1 | GO:0043631 | RNA polyadenylation | 18083836 |
| Hgene | PNPT1 | GO:0045926 | negative regulation of growth | 12721301 |
| Hgene | PNPT1 | GO:0051260 | protein homooligomerization | 20691904 |
| Hgene | PNPT1 | GO:0070207 | protein homotrimerization | 19509288|20691904 |
| Hgene | PNPT1 | GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | 16934922 |
| Hgene | PNPT1 | GO:0071850 | mitotic cell cycle arrest | 12721301 |
| Hgene | PNPT1 | GO:2000627 | positive regulation of miRNA catabolic process | 20547861 |
| Hgene | PNPT1 | GO:2000772 | regulation of cellular senescence | 16055741 |
| Tgene | FBXO11 | GO:0006464 | cellular protein modification process | 16487488 |
| Fusion gene breakpoints across PNPT1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across FBXO11 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
| Fusion gene information from FusionGDB2.0. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-D7-A6F2 | PNPT1 | chr2 | 55910919 | - | FBXO11 | chr2 | 48050499 | - |
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Fusion ORF Analysis |
| Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000447944 | PNPT1 | chr2 | 55910919 | - | ENST00000402508 | FBXO11 | chr2 | 48050499 | - | 3124 | 540 | 87 | 1925 | 612 |
| ENST00000447944 | PNPT1 | chr2 | 55910919 | - | ENST00000403359 | FBXO11 | chr2 | 48050499 | - | 3124 | 540 | 87 | 1925 | 612 |
| ENST00000447944 | PNPT1 | chr2 | 55910919 | - | ENST00000316377 | FBXO11 | chr2 | 48050499 | - | 3120 | 540 | 87 | 1925 | 612 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000447944 | ENST00000402508 | PNPT1 | chr2 | 55910919 | - | FBXO11 | chr2 | 48050499 | - | 0.000491632 | 0.9995084 |
| ENST00000447944 | ENST00000403359 | PNPT1 | chr2 | 55910919 | - | FBXO11 | chr2 | 48050499 | - | 0.000491632 | 0.9995084 |
| ENST00000447944 | ENST00000316377 | PNPT1 | chr2 | 55910919 | - | FBXO11 | chr2 | 48050499 | - | 0.00048974 | 0.9995103 |
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Fusion Amino Acid Sequences |
| For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >66797_66797_1_PNPT1-FBXO11_PNPT1_chr2_55910919_ENST00000447944_FBXO11_chr2_48050499_ENST00000316377_length(amino acids)=612AA_BP=150 MAACRYCCSCLRLRPLSDGPFLLPRRDRALTQLQVRALWSSAGSRAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKP SPSQFMPLVVDYRQKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQGYFESCNIHRNRIAGFEVKAYANPTVVRC EIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVR HNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPK IRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSH PILRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHT -------------------------------------------------------------- >66797_66797_2_PNPT1-FBXO11_PNPT1_chr2_55910919_ENST00000447944_FBXO11_chr2_48050499_ENST00000402508_length(amino acids)=612AA_BP=150 MAACRYCCSCLRLRPLSDGPFLLPRRDRALTQLQVRALWSSAGSRAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKP SPSQFMPLVVDYRQKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQGYFESCNIHRNRIAGFEVKAYANPTVVRC EIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVR HNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPK IRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSH PILRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHT -------------------------------------------------------------- >66797_66797_3_PNPT1-FBXO11_PNPT1_chr2_55910919_ENST00000447944_FBXO11_chr2_48050499_ENST00000403359_length(amino acids)=612AA_BP=150 MAACRYCCSCLRLRPLSDGPFLLPRRDRALTQLQVRALWSSAGSRAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKP SPSQFMPLVVDYRQKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQGYFESCNIHRNRIAGFEVKAYANPTVVRC EIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVR HNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPK IRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSH PILRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHT -------------------------------------------------------------- |
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Fusion Protein Functional Features |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:55910919/chr2:48050499) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | FBXO11 |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as DTL/CDT2, BCL6 and PRDM1/BLIMP1. The SCF(FBXO11) complex mediates ubiquitination and degradation of BCL6, thereby playing a role in the germinal center B-cells terminal differentiation toward memory B-cells and plasma cells. The SCF(FBXO11) complex also mediates ubiquitination and degradation of DTL, an important step for the regulation of TGF-beta signaling, cell migration and the timing of the cell-cycle progression and exit. Binds to and neddylates phosphorylated p53/TP53, inhibiting its transcriptional activity. SCF(FBXO11) does not seem to direct ubiquitination of p53/TP53. {ECO:0000269|PubMed:17098746, ECO:0000269|PubMed:22113614, ECO:0000269|PubMed:23478441, ECO:0000269|PubMed:23478445, ECO:0000269|PubMed:23892434, ECO:0000269|PubMed:24613396}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 395_417 | 382.0 | 844.0 | Repeat | Note=PbH1 1 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 418_440 | 382.0 | 844.0 | Repeat | Note=PbH1 2 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 441_463 | 382.0 | 844.0 | Repeat | Note=PbH1 3 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 464_486 | 382.0 | 844.0 | Repeat | Note=PbH1 4 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 487_509 | 382.0 | 844.0 | Repeat | Note=PbH1 5 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 510_532 | 382.0 | 844.0 | Repeat | Note=PbH1 6 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 533_555 | 382.0 | 844.0 | Repeat | Note=PbH1 7 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 556_578 | 382.0 | 844.0 | Repeat | Note=PbH1 8 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 579_601 | 382.0 | 844.0 | Repeat | Note=PbH1 9 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 602_624 | 382.0 | 844.0 | Repeat | Note=PbH1 10 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 625_647 | 382.0 | 844.0 | Repeat | Note=PbH1 11 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 648_670 | 382.0 | 844.0 | Repeat | Note=PbH1 12 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 671_693 | 382.0 | 844.0 | Repeat | Note=PbH1 13 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 694_716 | 382.0 | 844.0 | Repeat | Note=PbH1 14 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 717_739 | 382.0 | 844.0 | Repeat | Note=PbH1 15 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 740_762 | 382.0 | 844.0 | Repeat | Note=PbH1 16 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 763_785 | 382.0 | 844.0 | Repeat | Note=PbH1 17 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 786_808 | 382.0 | 844.0 | Repeat | Note=PbH1 18 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 809_830 | 382.0 | 844.0 | Repeat | Note=PbH1 19 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 395_417 | 382.0 | 844.0 | Repeat | Note=PbH1 1 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 418_440 | 382.0 | 844.0 | Repeat | Note=PbH1 2 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 441_463 | 382.0 | 844.0 | Repeat | Note=PbH1 3 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 464_486 | 382.0 | 844.0 | Repeat | Note=PbH1 4 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 487_509 | 382.0 | 844.0 | Repeat | Note=PbH1 5 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 510_532 | 382.0 | 844.0 | Repeat | Note=PbH1 6 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 533_555 | 382.0 | 844.0 | Repeat | Note=PbH1 7 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 556_578 | 382.0 | 844.0 | Repeat | Note=PbH1 8 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 579_601 | 382.0 | 844.0 | Repeat | Note=PbH1 9 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 602_624 | 382.0 | 844.0 | Repeat | Note=PbH1 10 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 625_647 | 382.0 | 844.0 | Repeat | Note=PbH1 11 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 648_670 | 382.0 | 844.0 | Repeat | Note=PbH1 12 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 671_693 | 382.0 | 844.0 | Repeat | Note=PbH1 13 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 694_716 | 382.0 | 844.0 | Repeat | Note=PbH1 14 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 717_739 | 382.0 | 844.0 | Repeat | Note=PbH1 15 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 740_762 | 382.0 | 844.0 | Repeat | Note=PbH1 16 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 763_785 | 382.0 | 844.0 | Repeat | Note=PbH1 17 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 786_808 | 382.0 | 844.0 | Repeat | Note=PbH1 18 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 809_830 | 382.0 | 844.0 | Repeat | Note=PbH1 19 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 464_486 | 466.0 | 928.0 | Repeat | Note=PbH1 4 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 487_509 | 466.0 | 928.0 | Repeat | Note=PbH1 5 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 510_532 | 466.0 | 928.0 | Repeat | Note=PbH1 6 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 533_555 | 466.0 | 928.0 | Repeat | Note=PbH1 7 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 556_578 | 466.0 | 928.0 | Repeat | Note=PbH1 8 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 579_601 | 466.0 | 928.0 | Repeat | Note=PbH1 9 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 602_624 | 466.0 | 928.0 | Repeat | Note=PbH1 10 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 625_647 | 466.0 | 928.0 | Repeat | Note=PbH1 11 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 648_670 | 466.0 | 928.0 | Repeat | Note=PbH1 12 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 671_693 | 466.0 | 928.0 | Repeat | Note=PbH1 13 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 694_716 | 466.0 | 928.0 | Repeat | Note=PbH1 14 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 717_739 | 466.0 | 928.0 | Repeat | Note=PbH1 15 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 740_762 | 466.0 | 928.0 | Repeat | Note=PbH1 16 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 763_785 | 466.0 | 928.0 | Repeat | Note=PbH1 17 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 786_808 | 466.0 | 928.0 | Repeat | Note=PbH1 18 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 809_830 | 466.0 | 928.0 | Repeat | Note=PbH1 19 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 833_904 | 382.0 | 844.0 | Zinc finger | UBR-type | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 833_904 | 382.0 | 844.0 | Zinc finger | UBR-type | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 833_904 | 466.0 | 928.0 | Zinc finger | UBR-type |
| - Not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | PNPT1 | chr2:55910919 | chr2:48050499 | ENST00000447944 | - | 5 | 28 | 605_664 | 151.0 | 784.0 | Domain | KH |
| Hgene | PNPT1 | chr2:55910919 | chr2:48050499 | ENST00000447944 | - | 5 | 28 | 679_750 | 151.0 | 784.0 | Domain | S1 motif |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000316377 | 10 | 23 | 153_199 | 382.0 | 844.0 | Domain | F-box | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000402508 | 10 | 23 | 153_199 | 382.0 | 844.0 | Domain | F-box | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 153_199 | 466.0 | 928.0 | Domain | F-box | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 395_417 | 466.0 | 928.0 | Repeat | Note=PbH1 1 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 418_440 | 466.0 | 928.0 | Repeat | Note=PbH1 2 | |
| Tgene | FBXO11 | chr2:55910919 | chr2:48050499 | ENST00000403359 | 10 | 23 | 441_463 | 466.0 | 928.0 | Repeat | Note=PbH1 3 |
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Fusion Protein-Protein Interaction |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
| Gene | PPI interactors |
| Protein-protein interactors based on sequence similarity (STRING) |
| Gene | STRING network |
| PNPT1 | |
| FBXO11 |
| - Retained interactions in fusion protein (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost interactions due to fusion (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to PNPT1-FBXO11 |
| Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to PNPT1-FBXO11 |
| Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Disease | Source | PMID |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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