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Fusion Protein:PTPRG-MYC |
Fusion Protein Summary |
 Fusion gene summary |
| Fusion partner gene information | Fusion gene name: PTPRG-MYC | FusionPDB ID: 70404 | FusionGDB2.0 ID: 70404 | Hgene | Tgene | Gene symbol | PTPRG | MYC | Gene ID | 5793 | 4609 |
| Gene name | protein tyrosine phosphatase receptor type G | MYC proto-oncogene, bHLH transcription factor | |
| Synonyms | HPTPG|PTPG|R-PTP-GAMMA|RPTPG | MRTL|MYCC|bHLHe39|c-Myc | |
| Cytomap | 3p14.2 | 8q24.21 | |
| Type of gene | protein-coding | protein-coding | |
| Description | receptor-type tyrosine-protein phosphatase gammaH_RG317H01.1protein tyrosine phosphatase gammaprotein tyrosine phosphatase, receptor type, gamma polypeptidereceptor type protein tyrosine phosphatase gammareceptor tyrosine phosphatase gammareceptor-t | myc proto-oncogene proteinavian myelocytomatosis viral oncogene homologclass E basic helix-loop-helix protein 39myc-related translation/localization regulatory factorproto-oncogene c-Myctranscription factor p64v-myc avian myelocytomatosis viral onco | |
| Modification date | 20200327 | 20200329 | |
| UniProtAcc | . | Q8N699 | |
| Ensembl transtripts involved in fusion gene | ENST ids | ENST00000295874, ENST00000474889, ENST00000495879, | ENST00000377970, ENST00000259523, ENST00000524013, |
| Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 18 X 14 X 10=2520 | 24 X 26 X 9=5616 |
| # samples | 22 | 36 | |
| ** MAII score | log2(22/2520*10)=-3.51784830486262 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(36/5616*10)=-3.96347412397489 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context (manual curation of fusion genes in FusionPDB) | PubMed: PTPRG [Title/Abstract] AND MYC [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | PTPRG(62258756)-MYC(128752644), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | PTPRG-MYC seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PTPRG-MYC seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PTPRG-MYC seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PTPRG-MYC seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PTPRG-MYC seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. PTPRG-MYC seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF. PTPRG-MYC seems lost the major protein functional domain in Tgene partner, which is a transcription factor due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | MYC | GO:0000122 | negative regulation of transcription by RNA polymerase II | 9924025|19160485 |
| Tgene | MYC | GO:0006338 | chromatin remodeling | 21533051 |
| Tgene | MYC | GO:0006879 | cellular iron ion homeostasis | 9924025 |
| Tgene | MYC | GO:0006974 | cellular response to DNA damage stimulus | 17873522 |
| Tgene | MYC | GO:0007050 | cell cycle arrest | 10962037 |
| Tgene | MYC | GO:0008284 | positive regulation of cell proliferation | 15994933|19160485 |
| Tgene | MYC | GO:0010332 | response to gamma radiation | 19179467 |
| Tgene | MYC | GO:0010468 | regulation of gene expression | 21447833 |
| Tgene | MYC | GO:0010628 | positive regulation of gene expression | 15459207 |
| Tgene | MYC | GO:0032986 | protein-DNA complex disassembly | 19160485 |
| Tgene | MYC | GO:0035690 | cellular response to drug | 17873522|19179467 |
| Tgene | MYC | GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 19179467 |
| Tgene | MYC | GO:0045893 | positive regulation of transcription, DNA-templated | 10962037|17558397|18818310 |
| Tgene | MYC | GO:0045944 | positive regulation of transcription by RNA polymerase II | 10723141 |
| Tgene | MYC | GO:0048146 | positive regulation of fibroblast proliferation | 9924025|18987311 |
| Tgene | MYC | GO:0048147 | negative regulation of fibroblast proliferation | 10962037 |
| Tgene | MYC | GO:0050679 | positive regulation of epithelial cell proliferation | 18987311 |
| Tgene | MYC | GO:0051276 | chromosome organization | 10962037 |
| Tgene | MYC | GO:0051782 | negative regulation of cell division | 10962037 |
| Tgene | MYC | GO:0070371 | ERK1 and ERK2 cascade | 15459207 |
| Tgene | MYC | GO:0071456 | cellular response to hypoxia | 15459207 |
| Tgene | MYC | GO:2001022 | positive regulation of response to DNA damage stimulus | 19179467 |
| Fusion gene breakpoints across PTPRG (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across MYC (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
| Fusion gene information from FusionGDB2.0. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-FP-8209-01A | PTPRG | chr3 | 62258756 | + | MYC | chr8 | 128752644 | + |
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Fusion ORF Analysis |
| Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000295874 | PTPRG | chr3 | 62258756 | + | ENST00000259523 | MYC | chr8 | 128752644 | + | 3688 | 3608 | 188 | 3685 | 1166 |
| ENST00000295874 | PTPRG | chr3 | 62258756 | + | ENST00000524013 | MYC | chr8 | 128752644 | + | 4585 | 3608 | 188 | 3850 | 1220 |
| ENST00000474889 | PTPRG | chr3 | 62258756 | + | ENST00000259523 | MYC | chr8 | 128752644 | + | 3775 | 3695 | 188 | 3772 | 1195 |
| ENST00000474889 | PTPRG | chr3 | 62258756 | + | ENST00000524013 | MYC | chr8 | 128752644 | + | 4672 | 3695 | 188 | 3937 | 1249 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000295874 | ENST00000259523 | PTPRG | chr3 | 62258756 | + | MYC | chr8 | 128752644 | + | 0.37824512 | 0.6217549 |
| ENST00000295874 | ENST00000524013 | PTPRG | chr3 | 62258756 | + | MYC | chr8 | 128752644 | + | 0.000854497 | 0.9991455 |
| ENST00000474889 | ENST00000259523 | PTPRG | chr3 | 62258756 | + | MYC | chr8 | 128752644 | + | 0.36756656 | 0.6324335 |
| ENST00000474889 | ENST00000524013 | PTPRG | chr3 | 62258756 | + | MYC | chr8 | 128752644 | + | 0.001118283 | 0.99888176 |
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Fusion Amino Acid Sequences |
| For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >70404_70404_1_PTPRG-MYC_PTPRG_chr3_62258756_ENST00000295874_MYC_chr8_128752644_ENST00000259523_length(amino acids)=1166AA_BP=1139 MRFSGGRSAASRIPRGLGPPSAGGPWSGRAGEAPRLSGGSHGGKNLFNKFTSLLSSFRCAFSDMRRLLEPCWWILFLKITSSVLHYVVCF PALTEGYVGALHENRHGSAVQIRRRKASGDPYWAYSGAYGPEHWVTSSVSCGGRHQSPIDILDQYARVGEEYQELQLDGFDNESSNKTWM KNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENRIIGAMAIFFQVS PRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVK SVEYLRNNFRPQQRLHDRVVSKSAVRDSWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSQPETIYHPPIMNYMISYSW TKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGS STWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFGGGGISSFPSTVWPTRLPTAASASKQAARPVLATTEALASPGPDGD SSPTKDGEGTEEGEKDEKSESEDGEREHEEDGEKDSEKKEKSGVTHAAEERNQTEPSPTPSSPNRTAEGGHQTIPGHEQDHTAVPTDQTG GRRDAGPGLDPDMVTSTQVPPTATEEQYAGSDPKRPEMPSKKPMSRGDRFSEDSRFITVNPAEKNTSGMISRPAPGRMEWIIPLIVVSAL TFVCLILLIAVLVYWRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITA EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK GRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSS -------------------------------------------------------------- >70404_70404_2_PTPRG-MYC_PTPRG_chr3_62258756_ENST00000295874_MYC_chr8_128752644_ENST00000524013_length(amino acids)=1220AA_BP=1140 MRFSGGRSAASRIPRGLGPPSAGGPWSGRAGEAPRLSGGSHGGKNLFNKFTSLLSSFRCAFSDMRRLLEPCWWILFLKITSSVLHYVVCF PALTEGYVGALHENRHGSAVQIRRRKASGDPYWAYSGAYGPEHWVTSSVSCGGRHQSPIDILDQYARVGEEYQELQLDGFDNESSNKTWM KNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENRIIGAMAIFFQVS PRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVK SVEYLRNNFRPQQRLHDRVVSKSAVRDSWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSQPETIYHPPIMNYMISYSW TKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGS STWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFGGGGISSFPSTVWPTRLPTAASASKQAARPVLATTEALASPGPDGD SSPTKDGEGTEEGEKDEKSESEDGEREHEEDGEKDSEKKEKSGVTHAAEERNQTEPSPTPSSPNRTAEGGHQTIPGHEQDHTAVPTDQTG GRRDAGPGLDPDMVTSTQVPPTATEEQYAGSDPKRPEMPSKKPMSRGDRFSEDSRFITVNPAEKNTSGMISRPAPGRMEWIIPLIVVSAL TFVCLILLIAVLVYWRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITA EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK GRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSS AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTERRNKKMRKKSMLFLWKRGRLLAKGQSLDHL -------------------------------------------------------------- >70404_70404_3_PTPRG-MYC_PTPRG_chr3_62258756_ENST00000474889_MYC_chr8_128752644_ENST00000259523_length(amino acids)=1195AA_BP=1168 MRFSGGRSAASRIPRGLGPPSAGGPWSGRAGEAPRLSGGSHGGKNLFNKFTSLLSSFRCAFSDMRRLLEPCWWILFLKITSSVLHYVVCF PALTEGYVGALHENRHGSAVQIRRRKASGDPYWAYSGAYGPEHWVTSSVSCGGRHQSPIDILDQYARVGEEYQELQLDGFDNESSNKTWM KNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENRIIGAMAIFFQVS PRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVK SVEYLRNNFRPQQRLHDRVVSKSAVRDSWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSQPETIYHPPIMNYMISYSW TKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGS STWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFGGGGISSFPSTVWPTRLPTAASASKQAARPVLATTEALASPGPDGD SSPTKDGEGTEEGEKDEKSESEDGEREHEEDGEKDSEKKEKSGVTHAAEERNQTEPSPTPSSPNRTAEGGHQTIPGHEQDHTAVPTDQTG GRRDAGPGLDPDMVTSTQVPPTATEEQYAGSDPKRPEMPSKKPMSRGDRFSEDSRFITVNPAEKNTSGMISRPAPGRMEWIIPLIVVSAL TFVCLILLIAVLVYWRGCNKIKSKGFPRRFREVPSSGERGEKGSRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHI GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGP LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERV VIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEE -------------------------------------------------------------- >70404_70404_4_PTPRG-MYC_PTPRG_chr3_62258756_ENST00000474889_MYC_chr8_128752644_ENST00000524013_length(amino acids)=1249AA_BP=1169 MRFSGGRSAASRIPRGLGPPSAGGPWSGRAGEAPRLSGGSHGGKNLFNKFTSLLSSFRCAFSDMRRLLEPCWWILFLKITSSVLHYVVCF PALTEGYVGALHENRHGSAVQIRRRKASGDPYWAYSGAYGPEHWVTSSVSCGGRHQSPIDILDQYARVGEEYQELQLDGFDNESSNKTWM KNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENRIIGAMAIFFQVS PRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVK SVEYLRNNFRPQQRLHDRVVSKSAVRDSWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSQPETIYHPPIMNYMISYSW TKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGS STWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFGGGGISSFPSTVWPTRLPTAASASKQAARPVLATTEALASPGPDGD SSPTKDGEGTEEGEKDEKSESEDGEREHEEDGEKDSEKKEKSGVTHAAEERNQTEPSPTPSSPNRTAEGGHQTIPGHEQDHTAVPTDQTG GRRDAGPGLDPDMVTSTQVPPTATEEQYAGSDPKRPEMPSKKPMSRGDRFSEDSRFITVNPAEKNTSGMISRPAPGRMEWIIPLIVVSAL TFVCLILLIAVLVYWRGCNKIKSKGFPRRFREVPSSGERGEKGSRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHI GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGP LKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERV VIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTER -------------------------------------------------------------- |
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Fusion Protein Functional Features |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:62258756/chr8:128752644) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | MYC |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: May regulate certain MYC target genes, MYC seems to be a direct upstream transcriptional activator. Does not seem to significantly affect growth cell capacity. Overexpression seems to mediate many of the known phenotypic features associated with MYC, including promotion of apoptosis, alteration of morphology, enhancement of anchorage-independent growth, tumorigenic conversion, promotion of genomic instability, and inhibition of hematopoietic differentiation (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - Retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000295874 | + | 21 | 29 | 349_448 | 1077.0 | 1417.0 | Domain | Fibronectin type-III |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000295874 | + | 21 | 29 | 58_321 | 1077.0 | 1417.0 | Domain | Alpha-carbonic anhydrase |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000474889 | + | 22 | 30 | 349_448 | 1106.0 | 1446.0 | Domain | Fibronectin type-III |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000474889 | + | 22 | 30 | 58_321 | 1106.0 | 1446.0 | Domain | Alpha-carbonic anhydrase |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000295874 | + | 21 | 29 | 1060_1066 | 1077.0 | 1417.0 | Region | Substrate binding |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000474889 | + | 22 | 30 | 1060_1066 | 1106.0 | 1446.0 | Region | Substrate binding |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000295874 | + | 21 | 29 | 20_736 | 1077.0 | 1417.0 | Topological domain | Extracellular |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000474889 | + | 22 | 30 | 20_736 | 1106.0 | 1446.0 | Topological domain | Extracellular |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000295874 | + | 21 | 29 | 737_762 | 1077.0 | 1417.0 | Transmembrane | Helical |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000474889 | + | 22 | 30 | 737_762 | 1106.0 | 1446.0 | Transmembrane | Helical |
| Tgene | MYC | chr3:62258756 | chr8:128752644 | ENST00000377970 | 1 | 3 | 354_406 | 267.3333333333333 | 455.0 | Domain | bHLH | |
| Tgene | MYC | chr3:62258756 | chr8:128752644 | ENST00000377970 | 1 | 3 | 413_434 | 267.3333333333333 | 455.0 | Region | Note=Leucine-zipper |
| - Not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000295874 | + | 21 | 29 | 1150_1410 | 1077.0 | 1417.0 | Domain | Tyrosine-protein phosphatase 2 |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000295874 | + | 21 | 29 | 848_1119 | 1077.0 | 1417.0 | Domain | Tyrosine-protein phosphatase 1 |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000474889 | + | 22 | 30 | 1150_1410 | 1106.0 | 1446.0 | Domain | Tyrosine-protein phosphatase 2 |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000474889 | + | 22 | 30 | 848_1119 | 1106.0 | 1446.0 | Domain | Tyrosine-protein phosphatase 1 |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000295874 | + | 21 | 29 | 763_1445 | 1077.0 | 1417.0 | Topological domain | Cytoplasmic |
| Hgene | PTPRG | chr3:62258756 | chr8:128752644 | ENST00000474889 | + | 22 | 30 | 763_1445 | 1106.0 | 1446.0 | Topological domain | Cytoplasmic |
| Tgene | MYC | chr3:62258756 | chr8:128752644 | ENST00000377970 | 1 | 3 | 33_37 | 267.3333333333333 | 455.0 | Compositional bias | Note=Poly-Gln | |
| Tgene | MYC | chr3:62258756 | chr8:128752644 | ENST00000377970 | 1 | 3 | 88_91 | 267.3333333333333 | 455.0 | Compositional bias | Note=Poly-Gly |
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Fusion Protein-Protein Interaction |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
| Gene | PPI interactors |
| Protein-protein interactors based on sequence similarity (STRING) |
| Gene | STRING network |
| PTPRG | |
| MYC |
| - Retained interactions in fusion protein (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost interactions due to fusion (protein functional feature from UniProt). |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to PTPRG-MYC |
| Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to PTPRG-MYC |
| Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
| Hgene | Tgene | Disease | Source | PMID |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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