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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:PTPRK-C11orf48

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: PTPRK-C11orf48
FusionPDB ID: 70434
FusionGDB2.0 ID: 70434
HgeneTgene
Gene symbol

PTPRK

C11orf48

Gene ID

5796

102288414

Gene nameprotein tyrosine phosphatase receptor type Kchromosome 11 open reading frame 98
SynonymsR-PTP-kappaC11orf48
Cytomap

6q22.33

11q12.3

Type of geneprotein-codingprotein-coding
Descriptionreceptor-type tyrosine-protein phosphatase kappadJ480J14.2.1 (protein tyrosine phosphatase, receptor type, K (R-PTP-KAPPA, protein tyrosine phosphatase kappa , protein tyrosine phosphatase kappaprotein-tyrosine phosphatase kappaprotein-tyrosine phosphauncharacterized protein C11orf98
Modification date2020032220200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST idsENST00000524481, ENST00000368207, 
ENST00000368210, ENST00000368213, 
ENST00000368215, ENST00000368226, 
ENST00000368227, ENST00000525459, 
ENST00000532331, 		ENST00000354588, 
ENST00000431002, ENST00000524958, 
ENST00000525675, ENST00000532208, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score36 X 18 X 16=103686 X 3 X 6=108
# samples 489
** MAII scorelog2(48/10368*10)=-4.43295940727611
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(9/108*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: PTPRK [Title/Abstract] AND C11orf48 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)PTPRK(128841403)-C11orf48(62432445), # samples:1
Anticipated loss of major functional domain due to fusion event.PTPRK-C11orf48 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
PTPRK-C11orf48 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
PTPRK-C11orf48 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF.
PTPRK-C11orf48 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
PTPRK-C11orf48 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
PTPRK-C11orf48 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePTPRK

GO:0006470

protein dephosphorylation

16263724

HgenePTPRK

GO:0007165

signal transduction

16849327

HgenePTPRK

GO:0007179

transforming growth factor beta receptor signaling pathway

15899872

HgenePTPRK

GO:0008285

negative regulation of cell proliferation

15899872|18276111

HgenePTPRK

GO:0010839

negative regulation of keratinocyte proliferation

16263724

HgenePTPRK

GO:0030336

negative regulation of cell migration

18276111

HgenePTPRK

GO:0034394

protein localization to cell surface

18276111

HgenePTPRK

GO:0034614

cellular response to reactive oxygen species

16849327

HgenePTPRK

GO:0034644

cellular response to UV

16849327

HgenePTPRK

GO:0045786

negative regulation of cell cycle

15899872

HgenePTPRK

GO:0045892

negative regulation of transcription, DNA-templated

18276111


check buttonFusion gene breakpoints across PTPRK (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across C11orf48 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-24-1553PTPRKchr6

128841403

-C11orf48chr11

62432445

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000368226PTPRKchr6128841403-ENST00000524958C11orf48chr1162432445-984416109669186
ENST00000368226PTPRKchr6128841403-ENST00000525675C11orf48chr1162432445-760416200745181
ENST00000368227PTPRKchr6128841403-ENST00000524958C11orf48chr1162432445-1035467160720186
ENST00000368227PTPRKchr6128841403-ENST00000525675C11orf48chr1162432445-811467251796181
ENST00000532331PTPRKchr6128841403-ENST00000524958C11orf48chr1162432445-7862182550182
ENST00000532331PTPRKchr6128841403-ENST00000525675C11orf48chr1162432445-5622182547181
ENST00000368213PTPRKchr6128841403-ENST00000524958C11orf48chr1162432445-89332518578186
ENST00000368213PTPRKchr6128841403-ENST00000525675C11orf48chr1162432445-669325109654181
ENST00000368210PTPRKchr6128841403-ENST00000524958C11orf48chr1162432445-92635851611186
ENST00000368210PTPRKchr6128841403-ENST00000525675C11orf48chr1162432445-702358142687181
ENST00000368215PTPRKchr6128841403-ENST00000524958C11orf48chr1162432445-66810010432140
ENST00000368215PTPRKchr6128841403-ENST00000525675C11orf48chr1162432445-4441004190140
ENST00000368207PTPRKchr6128841403-ENST00000524958C11orf48chr1162432445-89332518578186
ENST00000368207PTPRKchr6128841403-ENST00000525675C11orf48chr1162432445-669325109654181
ENST00000525459PTPRKchr6128841403-ENST00000524958C11orf48chr1162432445-89732922582186
ENST00000525459PTPRKchr6128841403-ENST00000525675C11orf48chr1162432445-673329113658181

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000368226ENST00000524958PTPRKchr6128841403-C11orf48chr1162432445-0.025436560.9745634
ENST00000368226ENST00000525675PTPRKchr6128841403-C11orf48chr1162432445-0.0368985420.96310145
ENST00000368227ENST00000524958PTPRKchr6128841403-C11orf48chr1162432445-0.0321792920.9678207
ENST00000368227ENST00000525675PTPRKchr6128841403-C11orf48chr1162432445-0.0580823270.9419177
ENST00000532331ENST00000524958PTPRKchr6128841403-C11orf48chr1162432445-0.0286008530.9713992
ENST00000532331ENST00000525675PTPRKchr6128841403-C11orf48chr1162432445-0.0371614620.9628385
ENST00000368213ENST00000524958PTPRKchr6128841403-C11orf48chr1162432445-0.0234102270.97658974
ENST00000368213ENST00000525675PTPRKchr6128841403-C11orf48chr1162432445-0.043224710.9567753
ENST00000368210ENST00000524958PTPRKchr6128841403-C11orf48chr1162432445-0.0469514580.95304847
ENST00000368210ENST00000525675PTPRKchr6128841403-C11orf48chr1162432445-0.054907220.9450928
ENST00000368215ENST00000524958PTPRKchr6128841403-C11orf48chr1162432445-0.0349259750.96507406
ENST00000368215ENST00000525675PTPRKchr6128841403-C11orf48chr1162432445-0.063789420.9362106
ENST00000368207ENST00000524958PTPRKchr6128841403-C11orf48chr1162432445-0.0234102270.97658974
ENST00000368207ENST00000525675PTPRKchr6128841403-C11orf48chr1162432445-0.043224710.9567753
ENST00000525459ENST00000524958PTPRKchr6128841403-C11orf48chr1162432445-0.0180562920.9819437
ENST00000525459ENST00000525675PTPRKchr6128841403-C11orf48chr1162432445-0.0415405330.9584595

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>70434_70434_1_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368207_C11orf48_chr11_62432445_ENST00000524958_length(amino acids)=186AA_BP=83
MPPRPAGDAGDAFAPEVVWRPRRRKKGGRAAVLSPSSPREARPAPPSWISRRSPRQLFAKLLETSPKLGMDTTAAAALPAFVALLLLSPW
PLLGSAQGQFSAGAEEEAVQTPAGVESGAASEAPGGRGCDRPRADHAAPPQEAGVQCTCQHYTVREEAQKTPPADPACPEREDSHGSGSP

--------------------------------------------------------------

>70434_70434_2_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368207_C11orf48_chr11_62432445_ENST00000525675_length(amino acids)=181AA_BP=71
MSSHRPHPARPGPLLRRGFRGDPPGSSLQSCLKLLPNSAWIRLRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERR
LRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKTAMEGEAGTEVGEGNPGFIWDNTSFFPLLSGSPFKASQ

--------------------------------------------------------------

>70434_70434_3_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368210_C11orf48_chr11_62432445_ENST00000524958_length(amino acids)=186AA_BP=83
MPPRPAGDAGDAFAPEVVWRPRRRKKGGRAAVLSPSSPREARPAPPSWISRRSPRQLFAKLLETSPKLGMDTTAAAALPAFVALLLLSPW
PLLGSAQGQFSAGAEEEAVQTPAGVESGAASEAPGGRGCDRPRADHAAPPQEAGVQCTCQHYTVREEAQKTPPADPACPEREDSHGSGSP

--------------------------------------------------------------

>70434_70434_4_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368210_C11orf48_chr11_62432445_ENST00000525675_length(amino acids)=181AA_BP=71
MSSHRPHPARPGPLLRRGFRGDPPGSSLQSCLKLLPNSAWIRLRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERR
LRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKTAMEGEAGTEVGEGNPGFIWDNTSFFPLLSGSPFKASQ

--------------------------------------------------------------

>70434_70434_5_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368213_C11orf48_chr11_62432445_ENST00000524958_length(amino acids)=186AA_BP=83
MPPRPAGDAGDAFAPEVVWRPRRRKKGGRAAVLSPSSPREARPAPPSWISRRSPRQLFAKLLETSPKLGMDTTAAAALPAFVALLLLSPW
PLLGSAQGQFSAGAEEEAVQTPAGVESGAASEAPGGRGCDRPRADHAAPPQEAGVQCTCQHYTVREEAQKTPPADPACPEREDSHGSGSP

--------------------------------------------------------------

>70434_70434_6_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368213_C11orf48_chr11_62432445_ENST00000525675_length(amino acids)=181AA_BP=71
MSSHRPHPARPGPLLRRGFRGDPPGSSLQSCLKLLPNSAWIRLRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERR
LRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKTAMEGEAGTEVGEGNPGFIWDNTSFFPLLSGSPFKASQ

--------------------------------------------------------------

>70434_70434_7_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368215_C11orf48_chr11_62432445_ENST00000524958_length(amino acids)=140AA_BP=29
MRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERRLRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLL

--------------------------------------------------------------

>70434_70434_8_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368215_C11orf48_chr11_62432445_ENST00000525675_length(amino acids)=140AA_BP=1
MALKGLPLSKGKKEVLSQINPGFPSPTSVPASPSMAVFSFWASRICWRSFLRFFPDSVMLARALDARFLRWCRVISPWSITAPTTRCLRR

--------------------------------------------------------------

>70434_70434_9_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368226_C11orf48_chr11_62432445_ENST00000524958_length(amino acids)=186AA_BP=83
MPPRPAGDAGDAFAPEVVWRPRRRKKGGRAAVLSPSSPREARPAPPSWISRRSPRQLFAKLLETSPKLGMDTTAAAALPAFVALLLLSPW
PLLGSAQGQFSAGAEEEAVQTPAGVESGAASEAPGGRGCDRPRADHAAPPQEAGVQCTCQHYTVREEAQKTPPADPACPEREDSHGSGSP

--------------------------------------------------------------

>70434_70434_10_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368226_C11orf48_chr11_62432445_ENST00000525675_length(amino acids)=181AA_BP=71
MSSHRPHPARPGPLLRRGFRGDPPGSSLQSCLKLLPNSAWIRLRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERR
LRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKTAMEGEAGTEVGEGNPGFIWDNTSFFPLLSGSPFKASQ

--------------------------------------------------------------

>70434_70434_11_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368227_C11orf48_chr11_62432445_ENST00000524958_length(amino acids)=186AA_BP=83
MPPRPAGDAGDAFAPEVVWRPRRRKKGGRAAVLSPSSPREARPAPPSWISRRSPRQLFAKLLETSPKLGMDTTAAAALPAFVALLLLSPW
PLLGSAQGQFSAGAEEEAVQTPAGVESGAASEAPGGRGCDRPRADHAAPPQEAGVQCTCQHYTVREEAQKTPPADPACPEREDSHGSGSP

--------------------------------------------------------------

>70434_70434_12_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000368227_C11orf48_chr11_62432445_ENST00000525675_length(amino acids)=181AA_BP=71
MSSHRPHPARPGPLLRRGFRGDPPGSSLQSCLKLLPNSAWIRLRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERR
LRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKTAMEGEAGTEVGEGNPGFIWDNTSFFPLLSGSPFKASQ

--------------------------------------------------------------

>70434_70434_13_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000525459_C11orf48_chr11_62432445_ENST00000524958_length(amino acids)=186AA_BP=83
MPPRPAGDAGDAFAPEVVWRPRRRKKGGRAAVLSPSSPREARPAPPSWISRRSPRQLFAKLLETSPKLGMDTTAAAALPAFVALLLLSPW
PLLGSAQGQFSAGAEEEAVQTPAGVESGAASEAPGGRGCDRPRADHAAPPQEAGVQCTCQHYTVREEAQKTPPADPACPEREDSHGSGSP

--------------------------------------------------------------

>70434_70434_14_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000525459_C11orf48_chr11_62432445_ENST00000525675_length(amino acids)=181AA_BP=71
MSSHRPHPARPGPLLRRGFRGDPPGSSLQSCLKLLPNSAWIRLRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERR
LRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKTAMEGEAGTEVGEGNPGFIWDNTSFFPLLSGSPFKASQ

--------------------------------------------------------------

>70434_70434_15_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000532331_C11orf48_chr11_62432445_ENST00000524958_length(amino acids)=182AA_BP=71
LSSHRPHPARPGPLLRRGFRGDPPGSSLQSCLKLLPNSAWIRLRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERR
LRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKTAMEVEAPSKPARTSEPQLKRQKKTKAPQDVEMKDLED

--------------------------------------------------------------

>70434_70434_16_PTPRK-C11orf48_PTPRK_chr6_128841403_ENST00000532331_C11orf48_chr11_62432445_ENST00000525675_length(amino acids)=181AA_BP=71
LSSHRPHPARPGPLLRRGFRGDPPGSSLQSCLKLLPNSAWIRLRRRRCLLLWRSCSSLLGLSWDRPKASSPQELKKKLFKRRRVLNRERR
LRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEKTAMEGEAGTEVGEGNPGFIWDNTSFFPLLSGSPFKASQ

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr6:128841403/chr11:62432445)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-1311173_143533.3333333333333361447.0DomainTyrosine-protein phosphatase 2
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-131196_28133.3333333333333361447.0DomainNote=Ig-like C2-type
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-131294_38933.3333333333333361447.0DomainFibronectin type-III 1
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-13131_19433.3333333333333361447.0DomainMAM
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-131392_48833.3333333333333361447.0DomainFibronectin type-III 2
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-131491_59533.3333333333333361447.0DomainFibronectin type-III 3
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-131597_68033.3333333333333361447.0DomainFibronectin type-III 4
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-131887_114133.3333333333333361447.0DomainTyrosine-protein phosphatase 1
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-1301173_143533.3333333333333361440.0DomainTyrosine-protein phosphatase 2
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-130196_28133.3333333333333361440.0DomainNote=Ig-like C2-type
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-130294_38933.3333333333333361440.0DomainFibronectin type-III 1
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-13031_19433.3333333333333361440.0DomainMAM
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-130392_48833.3333333333333361440.0DomainFibronectin type-III 2
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-130491_59533.3333333333333361440.0DomainFibronectin type-III 3
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-130597_68033.3333333333333361440.0DomainFibronectin type-III 4
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-130887_114133.3333333333333361440.0DomainTyrosine-protein phosphatase 1
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-1301173_143533.3333333333333361441.0DomainTyrosine-protein phosphatase 2
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-130196_28133.3333333333333361441.0DomainNote=Ig-like C2-type
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-130294_38933.3333333333333361441.0DomainFibronectin type-III 1
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-13031_19433.3333333333333361441.0DomainMAM
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-130392_48833.3333333333333361441.0DomainFibronectin type-III 2
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-130491_59533.3333333333333361441.0DomainFibronectin type-III 3
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-130597_68033.3333333333333361441.0DomainFibronectin type-III 4
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-130887_114133.3333333333333361441.0DomainTyrosine-protein phosphatase 1
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-1311082_108833.3333333333333361447.0RegionSubstrate binding
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-1301082_108833.3333333333333361440.0RegionSubstrate binding
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-1301082_108833.3333333333333361441.0RegionSubstrate binding
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-13127_75233.3333333333333361447.0Topological domainExtracellular
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-131775_143933.3333333333333361447.0Topological domainCytoplasmic
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-13027_75233.3333333333333361440.0Topological domainExtracellular
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-130775_143933.3333333333333361440.0Topological domainCytoplasmic
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-13027_75233.3333333333333361441.0Topological domainExtracellular
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-130775_143933.3333333333333361441.0Topological domainCytoplasmic
HgenePTPRKchr6:128841403chr11:62432445ENST00000368213-131753_77433.3333333333333361447.0TransmembraneHelical
HgenePTPRKchr6:128841403chr11:62432445ENST00000368215-130753_77433.3333333333333361440.0TransmembraneHelical
HgenePTPRKchr6:128841403chr11:62432445ENST00000368226-130753_77433.3333333333333361441.0TransmembraneHelical
TgeneC11orf48chr6:128841403chr11:62432445ENST00000354588371_128179.33333333333334264.0DomainLBH
TgeneC11orf48chr6:128841403chr11:62432445ENST00000431002151_128205.33333333333334290.0DomainLBH
TgeneC11orf48chr6:128841403chr11:62432445ENST00000532208371_128179.33333333333334264.0DomainLBH


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
PTPRK
C11orf48


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to PTPRK-C11orf48


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to PTPRK-C11orf48


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource