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Fusion Protein:RCCD1-BLM |
Fusion Protein Summary |
Fusion gene summary |
Fusion partner gene information | Fusion gene name: RCCD1-BLM | FusionPDB ID: 73298 | FusionGDB2.0 ID: 73298 | Hgene | Tgene | Gene symbol | RCCD1 | BLM | Gene ID | 91433 | 641 |
Gene name | RCC1 domain containing 1 | BLM RecQ like helicase | |
Synonyms | - | BS|MGRISCE1|RECQ2|RECQL2|RECQL3 | |
Cytomap | 15q26.1 | 15q26.1 | |
Type of gene | protein-coding | protein-coding | |
Description | RCC1 domain-containing protein 1 | Bloom syndrome proteinBloom syndrome RecQ like helicaseBloom syndrome, RecQ helicase-likeDNA helicase, RecQ-like type 2recQ protein-like 3 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q13867 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000556774, ENST00000394258, ENST00000555155, ENST00000556618, | ENST00000355112, ENST00000560509, ENST00000560136, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 2 X 8 X 2=32 | 7 X 13 X 3=273 |
# samples | 3 | 8 | |
** MAII score | log2(3/32*10)=-0.0931094043914815 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/273*10)=-1.77082904603249 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: RCCD1 [Title/Abstract] AND BLM [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | RCCD1(91498178)-BLM(91326052), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | RCCD1-BLM seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. RCCD1-BLM seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. RCCD1-BLM seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. RCCD1-BLM seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. RCCD1-BLM seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. RCCD1-BLM seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF. RCCD1-BLM seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | BLM | GO:0000729 | DNA double-strand break processing | 21325134 |
Tgene | BLM | GO:0006974 | cellular response to DNA damage stimulus | 23509288 |
Tgene | BLM | GO:0007095 | mitotic G2 DNA damage checkpoint | 11309417 |
Tgene | BLM | GO:0010165 | response to X-ray | 11309417 |
Tgene | BLM | GO:0031297 | replication fork processing | 17115688 |
Tgene | BLM | GO:0032508 | DNA duplex unwinding | 11735402|24816114|25901030 |
Tgene | BLM | GO:0044806 | G-quadruplex DNA unwinding | 11735402 |
Tgene | BLM | GO:0045893 | positive regulation of transcription, DNA-templated | 11781842 |
Tgene | BLM | GO:0051259 | protein complex oligomerization | 28228481 |
Tgene | BLM | GO:0051260 | protein homooligomerization | 28228481 |
Tgene | BLM | GO:0061820 | telomeric D-loop disassembly | 19734539 |
Tgene | BLM | GO:0071479 | cellular response to ionizing radiation | 23509288 |
Tgene | BLM | GO:0072711 | cellular response to hydroxyurea | 23509288 |
Tgene | BLM | GO:0072757 | cellular response to camptothecin | 23509288 |
Fusion gene breakpoints across RCCD1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across BLM (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
Fusion gene information from FusionGDB2.0. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91498177 | + | BLM | chr15 | 91326051 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91498177 | + | BLM | chr15 | 91328150 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91498178 | - | BLM | chr15 | 91326052 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91498178 | + | BLM | chr15 | 91326052 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91498178 | + | BLM | chr15 | 91328151 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91499113 | + | BLM | chr15 | 91326052 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91500733 | + | BLM | chr15 | 91326052 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91500954 | + | BLM | chr15 | 91326051 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91500954 | + | BLM | chr15 | 91328150 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91326052 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328151 | + |
ChimerDB4 | LUAD | TCGA-38-4630-01A | RCCD1 | chr15 | 91505004 | + | BLM | chr15 | 91290619 | + |
ChimerDB4 | LUAD | TCGA-38-4630 | RCCD1 | chr15 | 91498178 | + | BLM | chr15 | 91326051 | + |
ChimerDB4 | LUAD | TCGA-38-4630 | RCCD1 | chr15 | 91498178 | + | BLM | chr15 | 91328150 | + |
ChimerDB4 | LUAD | TCGA-38-4630 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328150 | + |
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Fusion ORF Analysis |
Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000394258 | RCCD1 | chr15 | 91500955 | + | ENST00000355112 | BLM | chr15 | 91328150 | + | 2656 | 881 | 19 | 2472 | 817 |
ENST00000394258 | RCCD1 | chr15 | 91500955 | + | ENST00000560509 | BLM | chr15 | 91328150 | + | 2134 | 881 | 19 | 2079 | 686 |
ENST00000555155 | RCCD1 | chr15 | 91500955 | + | ENST00000355112 | BLM | chr15 | 91328150 | + | 2645 | 870 | 8 | 2461 | 817 |
ENST00000555155 | RCCD1 | chr15 | 91500955 | + | ENST00000560509 | BLM | chr15 | 91328150 | + | 2123 | 870 | 8 | 2068 | 686 |
ENST00000556618 | RCCD1 | chr15 | 91500955 | + | ENST00000355112 | BLM | chr15 | 91328150 | + | 2576 | 801 | 122 | 2392 | 756 |
ENST00000556618 | RCCD1 | chr15 | 91500955 | + | ENST00000560509 | BLM | chr15 | 91328150 | + | 2054 | 801 | 122 | 1999 | 625 |
ENST00000394258 | RCCD1 | chr15 | 91500955 | + | ENST00000355112 | BLM | chr15 | 91328151 | + | 2656 | 881 | 19 | 2472 | 817 |
ENST00000394258 | RCCD1 | chr15 | 91500955 | + | ENST00000560509 | BLM | chr15 | 91328151 | + | 2134 | 881 | 19 | 2079 | 686 |
ENST00000555155 | RCCD1 | chr15 | 91500955 | + | ENST00000355112 | BLM | chr15 | 91328151 | + | 2645 | 870 | 8 | 2461 | 817 |
ENST00000555155 | RCCD1 | chr15 | 91500955 | + | ENST00000560509 | BLM | chr15 | 91328151 | + | 2123 | 870 | 8 | 2068 | 686 |
ENST00000556618 | RCCD1 | chr15 | 91500955 | + | ENST00000355112 | BLM | chr15 | 91328151 | + | 2576 | 801 | 122 | 2392 | 756 |
ENST00000556618 | RCCD1 | chr15 | 91500955 | + | ENST00000560509 | BLM | chr15 | 91328151 | + | 2054 | 801 | 122 | 1999 | 625 |
ENST00000394258 | RCCD1 | chr15 | 91500733 | + | ENST00000355112 | BLM | chr15 | 91326052 | + | 2641 | 759 | 19 | 2457 | 812 |
ENST00000394258 | RCCD1 | chr15 | 91500733 | + | ENST00000560509 | BLM | chr15 | 91326052 | + | 2119 | 759 | 19 | 2064 | 681 |
ENST00000555155 | RCCD1 | chr15 | 91500733 | + | ENST00000355112 | BLM | chr15 | 91326052 | + | 2630 | 748 | 8 | 2446 | 812 |
ENST00000555155 | RCCD1 | chr15 | 91500733 | + | ENST00000560509 | BLM | chr15 | 91326052 | + | 2108 | 748 | 8 | 2053 | 681 |
ENST00000556618 | RCCD1 | chr15 | 91500733 | + | ENST00000355112 | BLM | chr15 | 91326052 | + | 2561 | 679 | 122 | 2377 | 751 |
ENST00000556618 | RCCD1 | chr15 | 91500733 | + | ENST00000560509 | BLM | chr15 | 91326052 | + | 2039 | 679 | 122 | 1984 | 620 |
ENST00000394258 | RCCD1 | chr15 | 91500954 | + | ENST00000355112 | BLM | chr15 | 91328150 | + | 2656 | 881 | 19 | 2472 | 817 |
ENST00000394258 | RCCD1 | chr15 | 91500954 | + | ENST00000560509 | BLM | chr15 | 91328150 | + | 2134 | 881 | 19 | 2079 | 686 |
ENST00000555155 | RCCD1 | chr15 | 91500954 | + | ENST00000355112 | BLM | chr15 | 91328150 | + | 2645 | 870 | 8 | 2461 | 817 |
ENST00000555155 | RCCD1 | chr15 | 91500954 | + | ENST00000560509 | BLM | chr15 | 91328150 | + | 2123 | 870 | 8 | 2068 | 686 |
ENST00000556618 | RCCD1 | chr15 | 91500954 | + | ENST00000355112 | BLM | chr15 | 91328150 | + | 2576 | 801 | 122 | 2392 | 756 |
ENST00000556618 | RCCD1 | chr15 | 91500954 | + | ENST00000560509 | BLM | chr15 | 91328150 | + | 2054 | 801 | 122 | 1999 | 625 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000394258 | ENST00000355112 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328150 | + | 0.001975606 | 0.99802446 |
ENST00000394258 | ENST00000560509 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328150 | + | 0.010023432 | 0.9899766 |
ENST00000555155 | ENST00000355112 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328150 | + | 0.002019462 | 0.99798054 |
ENST00000555155 | ENST00000560509 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328150 | + | 0.010316914 | 0.98968303 |
ENST00000556618 | ENST00000355112 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328150 | + | 0.002197611 | 0.99780244 |
ENST00000556618 | ENST00000560509 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328150 | + | 0.011378819 | 0.9886212 |
ENST00000394258 | ENST00000355112 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328151 | + | 0.001975606 | 0.99802446 |
ENST00000394258 | ENST00000560509 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328151 | + | 0.010023432 | 0.9899766 |
ENST00000555155 | ENST00000355112 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328151 | + | 0.002019462 | 0.99798054 |
ENST00000555155 | ENST00000560509 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328151 | + | 0.010316914 | 0.98968303 |
ENST00000556618 | ENST00000355112 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328151 | + | 0.002197611 | 0.99780244 |
ENST00000556618 | ENST00000560509 | RCCD1 | chr15 | 91500955 | + | BLM | chr15 | 91328151 | + | 0.011378819 | 0.9886212 |
ENST00000394258 | ENST00000355112 | RCCD1 | chr15 | 91500733 | + | BLM | chr15 | 91326052 | + | 0.001613263 | 0.99838674 |
ENST00000394258 | ENST00000560509 | RCCD1 | chr15 | 91500733 | + | BLM | chr15 | 91326052 | + | 0.006597743 | 0.9934023 |
ENST00000555155 | ENST00000355112 | RCCD1 | chr15 | 91500733 | + | BLM | chr15 | 91326052 | + | 0.001641698 | 0.9983583 |
ENST00000555155 | ENST00000560509 | RCCD1 | chr15 | 91500733 | + | BLM | chr15 | 91326052 | + | 0.006766158 | 0.99323386 |
ENST00000556618 | ENST00000355112 | RCCD1 | chr15 | 91500733 | + | BLM | chr15 | 91326052 | + | 0.001763473 | 0.99823654 |
ENST00000556618 | ENST00000560509 | RCCD1 | chr15 | 91500733 | + | BLM | chr15 | 91326052 | + | 0.007664755 | 0.99233526 |
ENST00000394258 | ENST00000355112 | RCCD1 | chr15 | 91500954 | + | BLM | chr15 | 91328150 | + | 0.001975606 | 0.99802446 |
ENST00000394258 | ENST00000560509 | RCCD1 | chr15 | 91500954 | + | BLM | chr15 | 91328150 | + | 0.010023432 | 0.9899766 |
ENST00000555155 | ENST00000355112 | RCCD1 | chr15 | 91500954 | + | BLM | chr15 | 91328150 | + | 0.002019462 | 0.99798054 |
ENST00000555155 | ENST00000560509 | RCCD1 | chr15 | 91500954 | + | BLM | chr15 | 91328150 | + | 0.010316914 | 0.98968303 |
ENST00000556618 | ENST00000355112 | RCCD1 | chr15 | 91500954 | + | BLM | chr15 | 91328150 | + | 0.002197611 | 0.99780244 |
ENST00000556618 | ENST00000560509 | RCCD1 | chr15 | 91500954 | + | BLM | chr15 | 91328150 | + | 0.011378819 | 0.9886212 |
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Fusion Amino Acid Sequences |
For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >73298_73298_1_RCCD1-BLM_RCCD1_chr15_91500733_ENST00000394258_BLM_chr15_91326052_ENST00000355112_length(amino acids)=812AA_BP=241 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRFSMSFNRHNLKYYVLPKKPKKVA FDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHAS LPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFC KKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRHNAERL FKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLGKVFGV HYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHY FASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTSQATSGANSKLGIMAPPKPINRPFLKPSYA -------------------------------------------------------------- >73298_73298_2_RCCD1-BLM_RCCD1_chr15_91500733_ENST00000394258_BLM_chr15_91326052_ENST00000560509_length(amino acids)=681AA_BP=241 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRFSMSFNRHNLKYYVLPKKPKKVA FDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHAS LPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFC KKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLESLSSDPEVLLQIDGVTEDKLEKYGA EVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRK -------------------------------------------------------------- >73298_73298_3_RCCD1-BLM_RCCD1_chr15_91500733_ENST00000555155_BLM_chr15_91326052_ENST00000355112_length(amino acids)=812AA_BP=241 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRFSMSFNRHNLKYYVLPKKPKKVA FDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHAS LPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFC KKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRHNAERL FKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLGKVFGV HYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHY FASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTSQATSGANSKLGIMAPPKPINRPFLKPSYA -------------------------------------------------------------- >73298_73298_4_RCCD1-BLM_RCCD1_chr15_91500733_ENST00000555155_BLM_chr15_91326052_ENST00000560509_length(amino acids)=681AA_BP=241 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRFSMSFNRHNLKYYVLPKKPKKVA FDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHAS LPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFC KKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLESLSSDPEVLLQIDGVTEDKLEKYGA EVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRK -------------------------------------------------------------- >73298_73298_5_RCCD1-BLM_RCCD1_chr15_91500733_ENST00000556618_BLM_chr15_91326052_ENST00000355112_length(amino acids)=751AA_BP=180 MAEERPGAWFGFGFCGFGQELGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGP GPEALLQVWAAESALRGEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVF SWGGGRFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWIN QDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSM VHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVD IFLGSKSAKIQSGIFGKGSAYSRHNAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVA KVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSS PGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTS -------------------------------------------------------------- >73298_73298_6_RCCD1-BLM_RCCD1_chr15_91500733_ENST00000556618_BLM_chr15_91326052_ENST00000560509_length(amino acids)=620AA_BP=180 MAEERPGAWFGFGFCGFGQELGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGP GPEALLQVWAAESALRGEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVF SWGGGRFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWIN QDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSM VHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVD IFLESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRK -------------------------------------------------------------- >73298_73298_7_RCCD1-BLM_RCCD1_chr15_91500954_ENST00000394258_BLM_chr15_91328150_ENST00000355112_length(amino acids)=817AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRH NAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLG KVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIP VSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTSQATSGANSKLGIMAPPKPINRPFL -------------------------------------------------------------- >73298_73298_8_RCCD1-BLM_RCCD1_chr15_91500954_ENST00000394258_BLM_chr15_91328150_ENST00000560509_length(amino acids)=686AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLESLSSDPEVLLQIDGVTEDKL EKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGS -------------------------------------------------------------- >73298_73298_9_RCCD1-BLM_RCCD1_chr15_91500954_ENST00000555155_BLM_chr15_91328150_ENST00000355112_length(amino acids)=817AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRH NAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLG KVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIP VSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTSQATSGANSKLGIMAPPKPINRPFL -------------------------------------------------------------- >73298_73298_10_RCCD1-BLM_RCCD1_chr15_91500954_ENST00000555155_BLM_chr15_91328150_ENST00000560509_length(amino acids)=686AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLESLSSDPEVLLQIDGVTEDKL EKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGS -------------------------------------------------------------- >73298_73298_11_RCCD1-BLM_RCCD1_chr15_91500954_ENST00000556618_BLM_chr15_91328150_ENST00000355112_length(amino acids)=756AA_BP=226 MAEERPGAWFGFGFCGFGQELGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGP GPEALLQVWAAESALRGEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVF SWGGGRHGQLGHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQ QKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFN NLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTM NMLVDIFLGSKSAKIQSGIFGKGSAYSRHNAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQ KALVAKVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSP AEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSS -------------------------------------------------------------- >73298_73298_12_RCCD1-BLM_RCCD1_chr15_91500954_ENST00000556618_BLM_chr15_91328150_ENST00000560509_length(amino acids)=625AA_BP=226 MAEERPGAWFGFGFCGFGQELGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGP GPEALLQVWAAESALRGEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVF SWGGGRHGQLGHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQ QKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFN NLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTM NMLVDIFLESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRN -------------------------------------------------------------- >73298_73298_13_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000394258_BLM_chr15_91328150_ENST00000355112_length(amino acids)=817AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRH NAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLG KVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIP VSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTSQATSGANSKLGIMAPPKPINRPFL -------------------------------------------------------------- >73298_73298_14_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000394258_BLM_chr15_91328150_ENST00000560509_length(amino acids)=686AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLESLSSDPEVLLQIDGVTEDKL EKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGS -------------------------------------------------------------- >73298_73298_15_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000394258_BLM_chr15_91328151_ENST00000355112_length(amino acids)=817AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRH NAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLG KVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIP VSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTSQATSGANSKLGIMAPPKPINRPFL -------------------------------------------------------------- >73298_73298_16_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000394258_BLM_chr15_91328151_ENST00000560509_length(amino acids)=686AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLESLSSDPEVLLQIDGVTEDKL EKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGS -------------------------------------------------------------- >73298_73298_17_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000555155_BLM_chr15_91328150_ENST00000355112_length(amino acids)=817AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRH NAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLG KVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIP VSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTSQATSGANSKLGIMAPPKPINRPFL -------------------------------------------------------------- >73298_73298_18_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000555155_BLM_chr15_91328150_ENST00000560509_length(amino acids)=686AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLESLSSDPEVLLQIDGVTEDKL EKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGS -------------------------------------------------------------- >73298_73298_19_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000555155_BLM_chr15_91328151_ENST00000355112_length(amino acids)=817AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSAYSRH NAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLG KVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIP VSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSSASHTSQATSGANSKLGIMAPPKPINRPFL -------------------------------------------------------------- >73298_73298_20_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000555155_BLM_chr15_91328151_ENST00000560509_length(amino acids)=686AA_BP=287 MLGHESGACRVLSCRGPGTEIRQLQPLEGQRLASVPLAGSSQESPRARRSQAAAGRGRCSGMAEERPGAWFGFGFCGFGQELGSGRGRQV HSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGPGPEALLQVWAAESALRGEPLWAQNVVPEA EGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQG LVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRF VIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGF NPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLESLSSDPEVLLQIDGVTEDKL EKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGS -------------------------------------------------------------- >73298_73298_21_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000556618_BLM_chr15_91328150_ENST00000355112_length(amino acids)=756AA_BP=226 MAEERPGAWFGFGFCGFGQELGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGP GPEALLQVWAAESALRGEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVF SWGGGRHGQLGHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQ QKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFN NLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTM NMLVDIFLGSKSAKIQSGIFGKGSAYSRHNAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQ KALVAKVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSP AEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSS -------------------------------------------------------------- >73298_73298_22_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000556618_BLM_chr15_91328150_ENST00000560509_length(amino acids)=625AA_BP=226 MAEERPGAWFGFGFCGFGQELGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGP GPEALLQVWAAESALRGEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVF SWGGGRHGQLGHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQ QKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFN NLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTM NMLVDIFLESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRN -------------------------------------------------------------- >73298_73298_23_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000556618_BLM_chr15_91328151_ENST00000355112_length(amino acids)=756AA_BP=226 MAEERPGAWFGFGFCGFGQELGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGP GPEALLQVWAAESALRGEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVF SWGGGRHGQLGHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQ QKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFN NLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTM NMLVDIFLGSKSAKIQSGIFGKGSAYSRHNAERLFKKLILDKILDEDLYINANDQAIAYVMLGNKAQTVLNGNLKVDFMETENSSSVKKQ KALVAKVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSP AEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRNERKRKKMPASQRSKRRKTASSGSKAKGGSATCRKISSKTKSSSIIGSSS -------------------------------------------------------------- >73298_73298_24_RCCD1-BLM_RCCD1_chr15_91500955_ENST00000556618_BLM_chr15_91328151_ENST00000560509_length(amino acids)=625AA_BP=226 MAEERPGAWFGFGFCGFGQELGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRLELSGSASGAAGRCKDAWASEGLLAVLRAGP GPEALLQVWAAESALRGEPLWAQNVVPEAEGEDDPAGEAQAGRLPLLPCARAYVSPRAPFYRPLAPELRARQLELGAEHALLLDAAGQVF SWGGGRHGQLGHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSDDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQ QKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFN NLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTM NMLVDIFLESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDSSPGISLSSSRGPGRSAAEELDEEIPVSSHYFASKTRN -------------------------------------------------------------- |
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Fusion Protein Functional Features |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr15:91498178/chr15:91326052) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | BLM |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: The normal physiological role of BLM hydrolase is unknown, but it catalyzes the inactivation of the antitumor drug BLM (a glycopeptide) by hydrolyzing the carboxamide bond of its B-aminoalaninamide moiety thus protecting normal and malignant cells from BLM toxicity. {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RCCD1 | chr15:91500733 | chr15:91326052 | ENST00000394258 | + | 3 | 8 | 6_56 | 185.66666666666666 | 377.0 | Repeat | Note=RCC1 1 |
Hgene | RCCD1 | chr15:91500733 | chr15:91326052 | ENST00000556618 | + | 3 | 9 | 6_56 | 185.66666666666666 | 447.0 | Repeat | Note=RCC1 1 |
Hgene | RCCD1 | chr15:91500954 | chr15:91328150 | ENST00000394258 | + | 4 | 8 | 176_227 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 2 |
Hgene | RCCD1 | chr15:91500954 | chr15:91328150 | ENST00000394258 | + | 4 | 8 | 6_56 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 1 |
Hgene | RCCD1 | chr15:91500954 | chr15:91328150 | ENST00000556618 | + | 4 | 9 | 176_227 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 2 |
Hgene | RCCD1 | chr15:91500954 | chr15:91328150 | ENST00000556618 | + | 4 | 9 | 6_56 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 1 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328150 | ENST00000394258 | + | 4 | 8 | 176_227 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 2 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328150 | ENST00000394258 | + | 4 | 8 | 6_56 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 1 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328150 | ENST00000556618 | + | 4 | 9 | 176_227 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 2 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328150 | ENST00000556618 | + | 4 | 9 | 6_56 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 1 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328151 | ENST00000394258 | + | 4 | 8 | 176_227 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 2 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328151 | ENST00000394258 | + | 4 | 8 | 6_56 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 1 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328151 | ENST00000556618 | + | 4 | 9 | 176_227 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 2 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328151 | ENST00000556618 | + | 4 | 9 | 6_56 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 1 |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 1212_1292 | 851.6666666666666 | 1418.0 | Domain | HRDC | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 877_1024 | 851.6666666666666 | 1418.0 | Domain | Helicase C-terminal | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1212_1292 | 887.3333333333334 | 1418.0 | Domain | HRDC | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1212_1292 | 887.3333333333334 | 1418.0 | Domain | HRDC | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 1212_1292 | 887.3333333333334 | 1418.0 | Domain | HRDC | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 1334_1349 | 851.6666666666666 | 1418.0 | Motif | Nuclear localization signal | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1334_1349 | 887.3333333333334 | 1418.0 | Motif | Nuclear localization signal | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1334_1349 | 887.3333333333334 | 1418.0 | Motif | Nuclear localization signal | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 1334_1349 | 887.3333333333334 | 1418.0 | Motif | Nuclear localization signal | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 1000_1003 | 851.6666666666666 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 1094_1139 | 851.6666666666666 | 1418.0 | Region | DNA Holliday junction binding | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 1110_1112 | 851.6666666666666 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 1121_1125 | 851.6666666666666 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 1160_1166 | 851.6666666666666 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 1227_1244 | 851.6666666666666 | 1418.0 | Region | Necessary for ssDNA and DNA Holliday junction binding | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 870_873 | 851.6666666666666 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 897_899 | 851.6666666666666 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1000_1003 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1094_1139 | 887.3333333333334 | 1418.0 | Region | DNA Holliday junction binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1110_1112 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1121_1125 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1160_1166 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1227_1244 | 887.3333333333334 | 1418.0 | Region | Necessary for ssDNA and DNA Holliday junction binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 897_899 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1000_1003 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1094_1139 | 887.3333333333334 | 1418.0 | Region | DNA Holliday junction binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1110_1112 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1121_1125 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1160_1166 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 1227_1244 | 887.3333333333334 | 1418.0 | Region | Necessary for ssDNA and DNA Holliday junction binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 897_899 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 1000_1003 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 1094_1139 | 887.3333333333334 | 1418.0 | Region | DNA Holliday junction binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 1110_1112 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 1121_1125 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 1160_1166 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 1227_1244 | 887.3333333333334 | 1418.0 | Region | Necessary for ssDNA and DNA Holliday junction binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 897_899 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RCCD1 | chr15:91500733 | chr15:91326052 | ENST00000394258 | + | 3 | 8 | 176_227 | 185.66666666666666 | 377.0 | Repeat | Note=RCC1 2 |
Hgene | RCCD1 | chr15:91500733 | chr15:91326052 | ENST00000394258 | + | 3 | 8 | 229_317 | 185.66666666666666 | 377.0 | Repeat | Note=RCC1 3 |
Hgene | RCCD1 | chr15:91500733 | chr15:91326052 | ENST00000394258 | + | 3 | 8 | 318_371 | 185.66666666666666 | 377.0 | Repeat | Note=RCC1 4 |
Hgene | RCCD1 | chr15:91500733 | chr15:91326052 | ENST00000556618 | + | 3 | 9 | 176_227 | 185.66666666666666 | 447.0 | Repeat | Note=RCC1 2 |
Hgene | RCCD1 | chr15:91500733 | chr15:91326052 | ENST00000556618 | + | 3 | 9 | 229_317 | 185.66666666666666 | 447.0 | Repeat | Note=RCC1 3 |
Hgene | RCCD1 | chr15:91500733 | chr15:91326052 | ENST00000556618 | + | 3 | 9 | 318_371 | 185.66666666666666 | 447.0 | Repeat | Note=RCC1 4 |
Hgene | RCCD1 | chr15:91500954 | chr15:91328150 | ENST00000394258 | + | 4 | 8 | 229_317 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 3 |
Hgene | RCCD1 | chr15:91500954 | chr15:91328150 | ENST00000394258 | + | 4 | 8 | 318_371 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 4 |
Hgene | RCCD1 | chr15:91500954 | chr15:91328150 | ENST00000556618 | + | 4 | 9 | 229_317 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 3 |
Hgene | RCCD1 | chr15:91500954 | chr15:91328150 | ENST00000556618 | + | 4 | 9 | 318_371 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 4 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328150 | ENST00000394258 | + | 4 | 8 | 229_317 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 3 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328150 | ENST00000394258 | + | 4 | 8 | 318_371 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 4 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328150 | ENST00000556618 | + | 4 | 9 | 229_317 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 3 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328150 | ENST00000556618 | + | 4 | 9 | 318_371 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 4 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328151 | ENST00000394258 | + | 4 | 8 | 229_317 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 3 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328151 | ENST00000394258 | + | 4 | 8 | 318_371 | 226.33333333333334 | 377.0 | Repeat | Note=RCC1 4 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328151 | ENST00000556618 | + | 4 | 9 | 229_317 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 3 |
Hgene | RCCD1 | chr15:91500955 | chr15:91328151 | ENST00000556618 | + | 4 | 9 | 318_371 | 226.33333333333334 | 447.0 | Repeat | Note=RCC1 4 |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 292_299 | 851.6666666666666 | 1418.0 | Compositional bias | Note=Poly-Asp | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 310_316 | 851.6666666666666 | 1418.0 | Compositional bias | Note=Poly-Ser | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 557_566 | 851.6666666666666 | 1418.0 | Compositional bias | Note=Poly-Asp | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 292_299 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Asp | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 310_316 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Ser | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 557_566 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Asp | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 292_299 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Asp | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 310_316 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Ser | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 557_566 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Asp | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 292_299 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Asp | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 310_316 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Ser | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 557_566 | 887.3333333333334 | 1418.0 | Compositional bias | Note=Poly-Asp | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 676_851 | 851.6666666666666 | 1418.0 | Domain | Helicase ATP-binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 676_851 | 887.3333333333334 | 1418.0 | Domain | Helicase ATP-binding | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 877_1024 | 887.3333333333334 | 1418.0 | Domain | Helicase C-terminal | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 676_851 | 887.3333333333334 | 1418.0 | Domain | Helicase ATP-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 877_1024 | 887.3333333333334 | 1418.0 | Domain | Helicase C-terminal | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 676_851 | 887.3333333333334 | 1418.0 | Domain | Helicase ATP-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 877_1024 | 887.3333333333334 | 1418.0 | Domain | Helicase C-terminal | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 795_798 | 851.6666666666666 | 1418.0 | Motif | Note=DEAH box | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 795_798 | 887.3333333333334 | 1418.0 | Motif | Note=DEAH box | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 795_798 | 887.3333333333334 | 1418.0 | Motif | Note=DEAH box | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 795_798 | 887.3333333333334 | 1418.0 | Motif | Note=DEAH box | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 668_672 | 851.6666666666666 | 1418.0 | Nucleotide binding | ATP | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 692_696 | 851.6666666666666 | 1418.0 | Nucleotide binding | ATP | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 668_672 | 887.3333333333334 | 1418.0 | Nucleotide binding | ATP | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 692_696 | 887.3333333333334 | 1418.0 | Nucleotide binding | ATP | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 668_672 | 887.3333333333334 | 1418.0 | Nucleotide binding | ATP | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 692_696 | 887.3333333333334 | 1418.0 | Nucleotide binding | ATP | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 668_672 | 887.3333333333334 | 1418.0 | Nucleotide binding | ATP | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 692_696 | 887.3333333333334 | 1418.0 | Nucleotide binding | ATP | |
Tgene | BLM | chr15:91500733 | chr15:91326052 | ENST00000355112 | 11 | 22 | 362_414 | 851.6666666666666 | 1418.0 | Region | Necessary for dimerization and homooligomerization | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 362_414 | 887.3333333333334 | 1418.0 | Region | Necessary for dimerization and homooligomerization | |
Tgene | BLM | chr15:91500954 | chr15:91328150 | ENST00000355112 | 12 | 22 | 870_873 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 362_414 | 887.3333333333334 | 1418.0 | Region | Necessary for dimerization and homooligomerization | |
Tgene | BLM | chr15:91500955 | chr15:91328150 | ENST00000355112 | 12 | 22 | 870_873 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 362_414 | 887.3333333333334 | 1418.0 | Region | Necessary for dimerization and homooligomerization | |
Tgene | BLM | chr15:91500955 | chr15:91328151 | ENST00000355112 | 12 | 22 | 870_873 | 887.3333333333334 | 1418.0 | Region | 3' overhang DNA-binding |
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Fusion Protein-Protein Interaction |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
Gene | PPI interactors |
Protein-protein interactors based on sequence similarity (STRING) |
Gene | STRING network |
RCCD1 | |
BLM |
- Retained interactions in fusion protein (protein functional feature from UniProt). |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost interactions due to fusion (protein functional feature from UniProt). |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to RCCD1-BLM |
Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to RCCD1-BLM |
Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |