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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:RNF213-TBCD

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: RNF213-TBCD
FusionPDB ID: 74993
FusionGDB2.0 ID: 74993
HgeneTgene
Gene symbol

RNF213

TBCD

Gene ID

57674

6904

Gene namering finger protein 213tubulin folding cofactor D
SynonymsALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57PEBAT|SSD-1|tfcD
Cytomap

17q25.3

17q25.3

Type of geneprotein-codingprotein-coding
DescriptionE3 ubiquitin-protein ligase RNF213ALK lymphoma oligomerization partner on chromosome 17RING-type E3 ubiquitin transferase RNF213mysterintubulin-specific chaperone Dbeta-tubulin cofactor D
Modification date2020031320200313
UniProtAcc

Q63HN8

.
Ensembl transtripts involved in fusion geneENST idsENST00000336301, ENST00000508628, 
ENST00000582970, ENST00000319921, 
ENST00000456466, ENST00000427003, 
ENST00000397466, ENST00000539345, 
ENST00000576691, ENST00000355528, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score34 X 32 X 16=1740819 X 22 X 13=5434
# samples 4128
** MAII scorelog2(41/17408*10)=-5.40798274174489
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(28/5434*10)=-4.27851583327701
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: RNF213 [Title/Abstract] AND TBCD [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)RNF213(78237577)-TBCD(80828100), # samples:2
Anticipated loss of major functional domain due to fusion event.RNF213-TBCD seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
RNF213-TBCD seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
RNF213-TBCD seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF.
RNF213-TBCD seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
RNF213-TBCD seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRNF213

GO:0016567

protein ubiquitination

21799892

HgeneRNF213

GO:0051260

protein homooligomerization

24658080|26126547

HgeneRNF213

GO:0051865

protein autoubiquitination

21799892

TgeneTBCD

GO:0006457

protein folding

20740604

TgeneTBCD

GO:0007021

tubulin complex assembly

28158450

TgeneTBCD

GO:0007023

post-chaperonin tubulin folding pathway

11847227

TgeneTBCD

GO:0031115

negative regulation of microtubule polymerization

10831612|20740604


check buttonFusion gene breakpoints across RNF213 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across TBCD (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SKCMTCGA-XV-AAZV-01ARNF213chr17

78237577

-TBCDchr17

80828100

+
ChimerDB4SKCMTCGA-XV-AAZV-01ARNF213chr17

78237577

+TBCDchr17

80828100

+
ChimerDB4SKCMTCGA-XV-AAZVRNF213chr17

78237577

+TBCDchr17

80828099

+
ChimerDB4STADTCGA-D7-6822-01ARNF213chr17

78319369

+TBCDchr17

80714041

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000508628RNF213chr1778237577+ENST00000355528TBCDchr1780828099+28882421452502785
ENST00000508628RNF213chr1778237577+ENST00000397466TBCDchr1780828099+1018242100258314
ENST00000508628RNF213chr1778237577+ENST00000539345TBCDchr1780828099+28632421452616823
ENST00000456466RNF213chr1778237577+ENST00000355528TBCDchr1780828099+28862401432500785
ENST00000456466RNF213chr1778237577+ENST00000397466TBCDchr1780828099+1016240100056314
ENST00000456466RNF213chr1778237577+ENST00000539345TBCDchr1780828099+28612401432614823
ENST00000582970RNF213chr1778237577+ENST00000355528TBCDchr1780828099+28862401432500785
ENST00000582970RNF213chr1778237577+ENST00000397466TBCDchr1780828099+1016240100056314
ENST00000582970RNF213chr1778237577+ENST00000539345TBCDchr1780828099+28612401432614823
ENST00000319921RNF213chr1778237577+ENST00000355528TBCDchr1780828099+28842381412498785
ENST00000319921RNF213chr1778237577+ENST00000397466TBCDchr1780828099+101423899854314
ENST00000319921RNF213chr1778237577+ENST00000539345TBCDchr1780828099+28592381412612823
ENST00000508628RNF213chr1778237577+ENST00000355528TBCDchr1780828100+28882421452502785
ENST00000508628RNF213chr1778237577+ENST00000397466TBCDchr1780828100+1018242100258314
ENST00000508628RNF213chr1778237577+ENST00000539345TBCDchr1780828100+28632421452616823
ENST00000456466RNF213chr1778237577+ENST00000355528TBCDchr1780828100+28862401432500785
ENST00000456466RNF213chr1778237577+ENST00000397466TBCDchr1780828100+1016240100056314
ENST00000456466RNF213chr1778237577+ENST00000539345TBCDchr1780828100+28612401432614823
ENST00000582970RNF213chr1778237577+ENST00000355528TBCDchr1780828100+28862401432500785
ENST00000582970RNF213chr1778237577+ENST00000397466TBCDchr1780828100+1016240100056314
ENST00000582970RNF213chr1778237577+ENST00000539345TBCDchr1780828100+28612401432614823
ENST00000319921RNF213chr1778237577+ENST00000355528TBCDchr1780828100+28842381412498785
ENST00000319921RNF213chr1778237577+ENST00000397466TBCDchr1780828100+101423899854314
ENST00000319921RNF213chr1778237577+ENST00000539345TBCDchr1780828100+28592381412612823

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000508628ENST00000355528RNF213chr1778237577+TBCDchr1780828099+0.0054045570.99459547
ENST00000508628ENST00000397466RNF213chr1778237577+TBCDchr1780828099+0.0165989290.9834011
ENST00000508628ENST00000539345RNF213chr1778237577+TBCDchr1780828099+0.0052083180.9947917
ENST00000456466ENST00000355528RNF213chr1778237577+TBCDchr1780828099+0.0054570070.99454296
ENST00000456466ENST00000397466RNF213chr1778237577+TBCDchr1780828099+0.0165850560.98341495
ENST00000456466ENST00000539345RNF213chr1778237577+TBCDchr1780828099+0.0052618580.99473816
ENST00000582970ENST00000355528RNF213chr1778237577+TBCDchr1780828099+0.0054570070.99454296
ENST00000582970ENST00000397466RNF213chr1778237577+TBCDchr1780828099+0.0165850560.98341495
ENST00000582970ENST00000539345RNF213chr1778237577+TBCDchr1780828099+0.0052618580.99473816
ENST00000319921ENST00000355528RNF213chr1778237577+TBCDchr1780828099+0.0054557850.99454415
ENST00000319921ENST00000397466RNF213chr1778237577+TBCDchr1780828099+0.0159776830.9840223
ENST00000319921ENST00000539345RNF213chr1778237577+TBCDchr1780828099+0.0052548750.99474514
ENST00000508628ENST00000355528RNF213chr1778237577+TBCDchr1780828100+0.0054045570.99459547
ENST00000508628ENST00000397466RNF213chr1778237577+TBCDchr1780828100+0.0165989290.9834011
ENST00000508628ENST00000539345RNF213chr1778237577+TBCDchr1780828100+0.0052083180.9947917
ENST00000456466ENST00000355528RNF213chr1778237577+TBCDchr1780828100+0.0054570070.99454296
ENST00000456466ENST00000397466RNF213chr1778237577+TBCDchr1780828100+0.0165850560.98341495
ENST00000456466ENST00000539345RNF213chr1778237577+TBCDchr1780828100+0.0052618580.99473816
ENST00000582970ENST00000355528RNF213chr1778237577+TBCDchr1780828100+0.0054570070.99454296
ENST00000582970ENST00000397466RNF213chr1778237577+TBCDchr1780828100+0.0165850560.98341495
ENST00000582970ENST00000539345RNF213chr1778237577+TBCDchr1780828100+0.0052618580.99473816
ENST00000319921ENST00000355528RNF213chr1778237577+TBCDchr1780828100+0.0054557850.99454415
ENST00000319921ENST00000397466RNF213chr1778237577+TBCDchr1780828100+0.0159776830.9840223
ENST00000319921ENST00000539345RNF213chr1778237577+TBCDchr1780828100+0.0052548750.99474514

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>74993_74993_1_RNF213-TBCD_RNF213_chr17_78237577_ENST00000319921_TBCD_chr17_80828099_ENST00000355528_length(amino acids)=785AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKT

--------------------------------------------------------------

>74993_74993_2_RNF213-TBCD_RNF213_chr17_78237577_ENST00000319921_TBCD_chr17_80828099_ENST00000397466_length(amino acids)=314AA_BP=0
MNTLSPQRNPTDAHTKFCFTFRRHQTPAADARLLVNLLQALHCLLVQMVRDGPVLLGCKFVQGVSNFCAGENRPMPHVKIWTQCHGQQPR
EDLRGAELGCLLGQVVQRPRSQLSDDPIPVADLHGNQVVYHWLRVLRKAGNKHTYNQETVGSVTDGKIVSCGQNINTMRESALSPHILLE
GGRGCSSAVYVSVKHRSNHQCTRDCSHKGLQLLRLIGTREGPAHVAGGVPDVGAHAAGTPLLVVGQRLQDHGDNCYGGCRRQPLSALAAE

--------------------------------------------------------------

>74993_74993_3_RNF213-TBCD_RNF213_chr17_78237577_ENST00000319921_TBCD_chr17_80828099_ENST00000539345_length(amino acids)=823AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVDFPSATLVCVGTVQMYAHTHLRLGAPGPHCAHG
SALPRFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLG

--------------------------------------------------------------

>74993_74993_4_RNF213-TBCD_RNF213_chr17_78237577_ENST00000319921_TBCD_chr17_80828100_ENST00000355528_length(amino acids)=785AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKT

--------------------------------------------------------------

>74993_74993_5_RNF213-TBCD_RNF213_chr17_78237577_ENST00000319921_TBCD_chr17_80828100_ENST00000397466_length(amino acids)=314AA_BP=0
MNTLSPQRNPTDAHTKFCFTFRRHQTPAADARLLVNLLQALHCLLVQMVRDGPVLLGCKFVQGVSNFCAGENRPMPHVKIWTQCHGQQPR
EDLRGAELGCLLGQVVQRPRSQLSDDPIPVADLHGNQVVYHWLRVLRKAGNKHTYNQETVGSVTDGKIVSCGQNINTMRESALSPHILLE
GGRGCSSAVYVSVKHRSNHQCTRDCSHKGLQLLRLIGTREGPAHVAGGVPDVGAHAAGTPLLVVGQRLQDHGDNCYGGCRRQPLSALAAE

--------------------------------------------------------------

>74993_74993_6_RNF213-TBCD_RNF213_chr17_78237577_ENST00000319921_TBCD_chr17_80828100_ENST00000539345_length(amino acids)=823AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVDFPSATLVCVGTVQMYAHTHLRLGAPGPHCAHG
SALPRFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLG

--------------------------------------------------------------

>74993_74993_7_RNF213-TBCD_RNF213_chr17_78237577_ENST00000456466_TBCD_chr17_80828099_ENST00000355528_length(amino acids)=785AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKT

--------------------------------------------------------------

>74993_74993_8_RNF213-TBCD_RNF213_chr17_78237577_ENST00000456466_TBCD_chr17_80828099_ENST00000397466_length(amino acids)=314AA_BP=0
MNTLSPQRNPTDAHTKFCFTFRRHQTPAADARLLVNLLQALHCLLVQMVRDGPVLLGCKFVQGVSNFCAGENRPMPHVKIWTQCHGQQPR
EDLRGAELGCLLGQVVQRPRSQLSDDPIPVADLHGNQVVYHWLRVLRKAGNKHTYNQETVGSVTDGKIVSCGQNINTMRESALSPHILLE
GGRGCSSAVYVSVKHRSNHQCTRDCSHKGLQLLRLIGTREGPAHVAGGVPDVGAHAAGTPLLVVGQRLQDHGDNCYGGCRRQPLSALAAE

--------------------------------------------------------------

>74993_74993_9_RNF213-TBCD_RNF213_chr17_78237577_ENST00000456466_TBCD_chr17_80828099_ENST00000539345_length(amino acids)=823AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVDFPSATLVCVGTVQMYAHTHLRLGAPGPHCAHG
SALPRFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLG

--------------------------------------------------------------

>74993_74993_10_RNF213-TBCD_RNF213_chr17_78237577_ENST00000456466_TBCD_chr17_80828100_ENST00000355528_length(amino acids)=785AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKT

--------------------------------------------------------------

>74993_74993_11_RNF213-TBCD_RNF213_chr17_78237577_ENST00000456466_TBCD_chr17_80828100_ENST00000397466_length(amino acids)=314AA_BP=0
MNTLSPQRNPTDAHTKFCFTFRRHQTPAADARLLVNLLQALHCLLVQMVRDGPVLLGCKFVQGVSNFCAGENRPMPHVKIWTQCHGQQPR
EDLRGAELGCLLGQVVQRPRSQLSDDPIPVADLHGNQVVYHWLRVLRKAGNKHTYNQETVGSVTDGKIVSCGQNINTMRESALSPHILLE
GGRGCSSAVYVSVKHRSNHQCTRDCSHKGLQLLRLIGTREGPAHVAGGVPDVGAHAAGTPLLVVGQRLQDHGDNCYGGCRRQPLSALAAE

--------------------------------------------------------------

>74993_74993_12_RNF213-TBCD_RNF213_chr17_78237577_ENST00000456466_TBCD_chr17_80828100_ENST00000539345_length(amino acids)=823AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVDFPSATLVCVGTVQMYAHTHLRLGAPGPHCAHG
SALPRFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLG

--------------------------------------------------------------

>74993_74993_13_RNF213-TBCD_RNF213_chr17_78237577_ENST00000508628_TBCD_chr17_80828099_ENST00000355528_length(amino acids)=785AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKT

--------------------------------------------------------------

>74993_74993_14_RNF213-TBCD_RNF213_chr17_78237577_ENST00000508628_TBCD_chr17_80828099_ENST00000397466_length(amino acids)=314AA_BP=0
MNTLSPQRNPTDAHTKFCFTFRRHQTPAADARLLVNLLQALHCLLVQMVRDGPVLLGCKFVQGVSNFCAGENRPMPHVKIWTQCHGQQPR
EDLRGAELGCLLGQVVQRPRSQLSDDPIPVADLHGNQVVYHWLRVLRKAGNKHTYNQETVGSVTDGKIVSCGQNINTMRESALSPHILLE
GGRGCSSAVYVSVKHRSNHQCTRDCSHKGLQLLRLIGTREGPAHVAGGVPDVGAHAAGTPLLVVGQRLQDHGDNCYGGCRRQPLSALAAE

--------------------------------------------------------------

>74993_74993_15_RNF213-TBCD_RNF213_chr17_78237577_ENST00000508628_TBCD_chr17_80828099_ENST00000539345_length(amino acids)=823AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVDFPSATLVCVGTVQMYAHTHLRLGAPGPHCAHG
SALPRFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLG

--------------------------------------------------------------

>74993_74993_16_RNF213-TBCD_RNF213_chr17_78237577_ENST00000508628_TBCD_chr17_80828100_ENST00000355528_length(amino acids)=785AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKT

--------------------------------------------------------------

>74993_74993_17_RNF213-TBCD_RNF213_chr17_78237577_ENST00000508628_TBCD_chr17_80828100_ENST00000397466_length(amino acids)=314AA_BP=0
MNTLSPQRNPTDAHTKFCFTFRRHQTPAADARLLVNLLQALHCLLVQMVRDGPVLLGCKFVQGVSNFCAGENRPMPHVKIWTQCHGQQPR
EDLRGAELGCLLGQVVQRPRSQLSDDPIPVADLHGNQVVYHWLRVLRKAGNKHTYNQETVGSVTDGKIVSCGQNINTMRESALSPHILLE
GGRGCSSAVYVSVKHRSNHQCTRDCSHKGLQLLRLIGTREGPAHVAGGVPDVGAHAAGTPLLVVGQRLQDHGDNCYGGCRRQPLSALAAE

--------------------------------------------------------------

>74993_74993_18_RNF213-TBCD_RNF213_chr17_78237577_ENST00000508628_TBCD_chr17_80828100_ENST00000539345_length(amino acids)=823AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVDFPSATLVCVGTVQMYAHTHLRLGAPGPHCAHG
SALPRFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLG

--------------------------------------------------------------

>74993_74993_19_RNF213-TBCD_RNF213_chr17_78237577_ENST00000582970_TBCD_chr17_80828099_ENST00000355528_length(amino acids)=785AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKT

--------------------------------------------------------------

>74993_74993_20_RNF213-TBCD_RNF213_chr17_78237577_ENST00000582970_TBCD_chr17_80828099_ENST00000397466_length(amino acids)=314AA_BP=0
MNTLSPQRNPTDAHTKFCFTFRRHQTPAADARLLVNLLQALHCLLVQMVRDGPVLLGCKFVQGVSNFCAGENRPMPHVKIWTQCHGQQPR
EDLRGAELGCLLGQVVQRPRSQLSDDPIPVADLHGNQVVYHWLRVLRKAGNKHTYNQETVGSVTDGKIVSCGQNINTMRESALSPHILLE
GGRGCSSAVYVSVKHRSNHQCTRDCSHKGLQLLRLIGTREGPAHVAGGVPDVGAHAAGTPLLVVGQRLQDHGDNCYGGCRRQPLSALAAE

--------------------------------------------------------------

>74993_74993_21_RNF213-TBCD_RNF213_chr17_78237577_ENST00000582970_TBCD_chr17_80828099_ENST00000539345_length(amino acids)=823AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVDFPSATLVCVGTVQMYAHTHLRLGAPGPHCAHG
SALPRFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLG

--------------------------------------------------------------

>74993_74993_22_RNF213-TBCD_RNF213_chr17_78237577_ENST00000582970_TBCD_chr17_80828100_ENST00000355528_length(amino acids)=785AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKT

--------------------------------------------------------------

>74993_74993_23_RNF213-TBCD_RNF213_chr17_78237577_ENST00000582970_TBCD_chr17_80828100_ENST00000397466_length(amino acids)=314AA_BP=0
MNTLSPQRNPTDAHTKFCFTFRRHQTPAADARLLVNLLQALHCLLVQMVRDGPVLLGCKFVQGVSNFCAGENRPMPHVKIWTQCHGQQPR
EDLRGAELGCLLGQVVQRPRSQLSDDPIPVADLHGNQVVYHWLRVLRKAGNKHTYNQETVGSVTDGKIVSCGQNINTMRESALSPHILLE
GGRGCSSAVYVSVKHRSNHQCTRDCSHKGLQLLRLIGTREGPAHVAGGVPDVGAHAAGTPLLVVGQRLQDHGDNCYGGCRRQPLSALAAE

--------------------------------------------------------------

>74993_74993_24_RNF213-TBCD_RNF213_chr17_78237577_ENST00000582970_TBCD_chr17_80828100_ENST00000539345_length(amino acids)=823AA_BP=25
MECPSCQHVSKEETPKFCSQCGERLPPAAPIAVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIA
AVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKISHWDGVIRELAARAL
HNLAQQAPEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRGLGGQLMR
QAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRHLHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNP
EEMTRCGFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKAGAPDEAVCGENVSQIYCALLGCMD
DYTTDSRGDVGTWVRKAAMTSLMDLTLLLARSQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEK
LFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTESTIRHSTQSLFEYMKGIQSDPQALGSFSGTLLQIFEDNLLNE
RVSVPLLKTLDHVLTHGCFDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVDFPSATLVCVGTVQMYAHTHLRLGAPGPHCAHG
SALPRFCEMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLG

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:78237577/chr17:80828100)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
RNF213

Q63HN8

.
FUNCTION: Atypical E3 ubiquitin ligase that can catalyze ubiquitination of both proteins and lipids, and which is involved in various processes, such as lipid metabolism, angiogenesis and cell-autonomous immunity (PubMed:21799892, PubMed:26126547, PubMed:26278786, PubMed:26766444, PubMed:30705059, PubMed:32139119, PubMed:34012115). Acts as a key immune sensor by catalyzing ubiquitination of the lipid A moiety of bacterial lipopolysaccharide (LPS) via its RZ-type zinc-finger: restricts the proliferation of cytosolic bacteria, such as Salmonella, by generating the bacterial ubiquitin coat through the ubiquitination of LPS (PubMed:34012115). Also acts indirectly by mediating the recruitment of the LUBAC complex, which conjugates linear polyubiquitin chains (PubMed:34012115). Ubiquitination of LPS triggers cell-autonomous immunity, such as antibacterial autophagy, leading to degradation of the microbial invader (PubMed:34012115). Involved in lipid metabolism by regulating fat storage and lipid droplet formation; act by inhibiting the lipolytic process (PubMed:30705059). Also regulates lipotoxicity by inhibiting desaturation of fatty acids (PubMed:30846318). Also acts as an E3 ubiquitin-protein ligase via its RING-type zinc finger: mediates 'Lys-63'-linked ubiquitination of target proteins (PubMed:32139119, PubMed:33842849). Involved in the non-canonical Wnt signaling pathway in vascular development: acts by mediating ubiquitination and degradation of FLNA and NFATC2 downstream of RSPO3, leading to inhibit the non-canonical Wnt signaling pathway and promoting vessel regression (PubMed:26766444). Also has ATPase activity; ATPase activity is required for ubiquitination of LPS (PubMed:34012115). {ECO:0000269|PubMed:21799892, ECO:0000269|PubMed:26126547, ECO:0000269|PubMed:26278786, ECO:0000269|PubMed:26766444, ECO:0000269|PubMed:30705059, ECO:0000269|PubMed:30846318, ECO:0000269|PubMed:32139119, ECO:0000269|PubMed:33842849, ECO:0000269|PubMed:34012115}.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneTBCDchr17:78237577chr17:80828099ENST000003555281239557_594439.33333333333331193.0RepeatNote=HEAT 2
TgeneTBCDchr17:78237577chr17:80828099ENST000003555281239596_632439.33333333333331193.0RepeatNote=HEAT 3
TgeneTBCDchr17:78237577chr17:80828100ENST000003555281239557_594439.33333333333331193.0RepeatNote=HEAT 2
TgeneTBCDchr17:78237577chr17:80828100ENST000003555281239596_632439.33333333333331193.0RepeatNote=HEAT 3

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRNF213chr17:78237577chr17:80828099ENST00000319921+217343_37432.3333333333333361064.0Coiled coilOntology_term=ECO:0000255
HgeneRNF213chr17:78237577chr17:80828099ENST00000508628+269343_37432.3333333333333365257.0Coiled coilOntology_term=ECO:0000255
HgeneRNF213chr17:78237577chr17:80828099ENST00000582970+268343_37432.3333333333333365208.0Coiled coilOntology_term=ECO:0000255
HgeneRNF213chr17:78237577chr17:80828100ENST00000319921+217343_37432.3333333333333361064.0Coiled coilOntology_term=ECO:0000255
HgeneRNF213chr17:78237577chr17:80828100ENST00000508628+269343_37432.3333333333333365257.0Coiled coilOntology_term=ECO:0000255
HgeneRNF213chr17:78237577chr17:80828100ENST00000582970+268343_37432.3333333333333365208.0Coiled coilOntology_term=ECO:0000255
HgeneRNF213chr17:78237577chr17:80828099ENST00000319921+2173997_403632.3333333333333361064.0Zinc fingerRING-type
HgeneRNF213chr17:78237577chr17:80828099ENST00000508628+2693997_403632.3333333333333365257.0Zinc fingerRING-type
HgeneRNF213chr17:78237577chr17:80828099ENST00000582970+2683997_403632.3333333333333365208.0Zinc fingerRING-type
HgeneRNF213chr17:78237577chr17:80828100ENST00000319921+2173997_403632.3333333333333361064.0Zinc fingerRING-type
HgeneRNF213chr17:78237577chr17:80828100ENST00000508628+2693997_403632.3333333333333365257.0Zinc fingerRING-type
HgeneRNF213chr17:78237577chr17:80828100ENST00000582970+2683997_403632.3333333333333365208.0Zinc fingerRING-type
TgeneTBCDchr17:78237577chr17:80828099ENST000003555281239361_399439.33333333333331193.0RepeatNote=HEAT 1
TgeneTBCDchr17:78237577chr17:80828100ENST000003555281239361_399439.33333333333331193.0RepeatNote=HEAT 1


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors
RNF213tat, UBC, vpu, CBX2, CBX4, CBX6, EGFR, PLAC9, RNF213, TRIM23, GOLGA2, REL, TRIM27, TRIP6, UBXN11, KRT40, CD244, SCN2B, IFI16, PTPN1, MRPL50, RNASEH2B, Kif4, Ube2k, Rpl35, GAN, MCM2, ATOH1, DLK2, SIGLECL1, SDC2, LAMP3, CYLD, HNRNPL, UBE2M, USP15, LYAR, HNRNPK, ITPR3, UBE2L3, UBE2D2, ESR2, RNF123, KIAA1429, CTDP1, MTDH, CEBPD, UNC93B1, AHNAK2, COPE, CPNE8, GNB1, GTSE1, LMNA, NOLC1, PLOD2, RPS12, SCRIB, SMTN, SNRPD2, SRPR, TCEB2, TPM2, UACA, ORF7a, SH2D3C, HIST1H1A, nsp5, nsp2, nsp6, CIT, AURKB, CHMP4C, KIF14, TRIM66, FIS1, OCIAD1, SUMO2, BRD4, CUL4A, UBE2D3, BAG5, AR, ATG5, IGHM, SLC35G1, NPTN, OPALIN, EFNB1, GCGR, C19orf38, HCST, LOC388882, GPR17, C5AR1, UPK2, CD40, OSTM1, FPR1, TACSTD2, RELT, TMEM55B, VSIG4, HLA-B, TMEM9B, NPDC1, BSG, GPR45, FAM174A, STK16, GPR182, MFSD4, MGARP, CLEC4A, HS2ST1, FFAR1, SGCA, HLA-C, UBE2N, UBE2U, SLFN11, FBXW7,


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
RNF213
TBCD


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to RNF213-TBCD


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to RNF213-TBCD


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneRNF213C1846689MOYAMOYA DISEASE 29CTD_human;UNIPROT
HgeneRNF213C0026654Moyamoya Disease3ORPHANET
HgeneRNF213C2931384Moyamoya disease 13ORPHANET